You will find at this page the whole genome alignments generated by the Berkeley Genome Pipeline, as well as the Pipeline software.

If the whole genome alignments you wish to download are not listed on this page, please send an email to vista@lbl.gov .

Please note that many of the data listed below, including assemblies used for the alignments, are unpublished - we ask that you respect the scientific contributions of the data producers (see, for example, NHGRI Rapid Data Release Policy).

Alignments

Pipeline Software:

The complete source code can be downloaded by clicking the "I agree" button after reading the End User License Agreement.
Contact vista@lbl.gov for help and comments.