Tools for Comparative Genomics

Whole Genome Comparative Analysis of the Rice v.6.0 Genome

From this page you can access the results of:

the multiple alignments

• Rice v.6.0, Maize v.4a.53, Sorghum bicolor v.1.0, Brachypodium distachyon v.1.0 and Setaria italica v.1.0 genomes.

the pairwise alignments of the

Rice v.6.0 genome produced by the MSU Rice Genome Annotation Project with the following genomes:

• The Rice v.6.0 (dupl.) genome produced by the MSU Rice Genome Annotation Project

• The Maize v.4a.53 genome produced by the Maize Genome Sequencing Project

• The Maize B73 v.2 genome produced by the Maize Genome Sequencing Project

• The Arabidopsis thaliana (TAIR10) genome produced by The Arabidopsis Information Resource (TAIR)

• The Poplar v.2.0 genome produced by the JGI

• The Medicago truncatula release Mt3.0 genome produced by the NSF/EU Medicago truncatula genome sequencing project

• The Chlamydomonas reinhardtii v.4.0 genome produced by the JGI

• The Citrus sinensis v.1.0 genome produced by the JGI

• The Sorghum bicolor v.1.0 genome produced by the JGI

• The Moss v.1.1 genome produced by the JGI

• The Selaginella moellendorffii v.1.0 genome produced by the JGI

• The Glycine max genome produced by the JGI

• The Wine grape genome produced by the French-Italian Public Consortium for Grapevine Genome Characterization

• The Wine grape genome produced by the French-Italian Public Consortium for Grapevine Genome Characterization

• The Arabidopsis lyrata v.1.0 genome produced by the JGI

• The Carica papaya genome produced by the Hawaii Papaya Genome Project

• The Brachypodium distachyon v.1.0 genome produced by the JGI

• The Manihot esculenta v.4 genome produced by The Cassava Genome Project

• The Manihot esculenta v.1.1 genome produced by The Cassava Genome Project

• The Ricinus communis release 0.1 genome produced by The Institute for Genomic Research (TIGR)

• The Cucumis sativus v.1 genome produced by the Cucumber genome project

• The Mimulus guttatus v.1.0 genome produced by the JGI

• The Setaria italica v.2.0 genome produced by the JGI

• The Prunus persica v.1.0 genome produced by the International Peach Genome Initiative

• The Aquilegia coerulea v.1.0 genome produced by the JGI

• The Eucalyptus grandis v.1.0 genome produced by the JGI

Annotation for this genome comes from the JGI.

Methods and references