Tools for Comparative Genomics

Whole Genome Comparative Analysis of the Theobroma cacao v.1.1 Genome

From this page you can access the results of alignments of the Theobroma cacao v.1.1 genome produced by the Cacao Genome Project with the following genomes:

• The Rice v.7.0 genome produced by the MSU Rice Genome Annotation Project

• The Arabidopsis thaliana (TAIR10) genome produced by The Arabidopsis Information Resource (TAIR)

• The Poplar v.3.0 genome produced by the JGI

• The Citrus sinensis v.1.0 genome produced by the JGI

• The Soybean v.2.0 genome produced by the JGI

• The Glycine max genome produced by the JGI

• The Wine grape genome produced by the French-Italian Public Consortium for Grapevine Genome Characterization

• The Arabidopsis lyrata v.1.0 genome produced by the JGI

• The Carica papaya genome produced by the Hawaii Papaya Genome Project

• The Capsella rubella v.1.0 genome produced by the JGI

• The Mimulus guttatus v.1.0 genome produced by the JGI

• The Mimulus guttatus v.2.0 genome produced by the JGI

• The Aquilegia coerulea v.1.0 genome produced by the JGI

• The Citrus clementina v.1.0 genome produced by the JGI

• The Eucalyptus grandis v.1.0 genome produced by the JGI

• The Thellungiella halophila v.1.0 genome produced by the JGI

• The Brassica rapa v.1.1 genome produced by the Brassica database (BRAD)

• The Gossypium raimondii v.2.0 genome produced by the JGI

• The A. halleri v.1.0 genome produced by the JGI

• The C. grandiflora v.1.0 genome produced by the JGI

• The Drummond's rockcress v.1.0 genome produced by the JGI

• The Turnip mustard v.1.0 genome produced by the JGI

Annotation for this genome comes from the Cacao Genome Project.

Methods and references