| adjustedGraphHeight (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | adjustedGraphWidth (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | clone() | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | convertX(double x) | gov::lbl::genome::gui::AbstractCurveView |  [inline, protected] | 
  | convertX(long x) | gov::lbl::genome::gui::AbstractCurveView |  [inline, protected] | 
  | convertY(double y) | gov::lbl::genome::gui::AbstractCurveView |  [inline, protected] | 
  | curveColor (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | fillAnnotations(Graphics g) | gov::lbl::genome::gui::VistaCurveView |  [inline] | 
  | g2d (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | getContigs() | gov::lbl::genome::gui::VistaCurveView |  [inline] | 
  | getCurveModel() | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | getGraphView() | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | getMaxX() | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | getMaxY() | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | getMinX() | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | getMinY() | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | getRunOrg() | gov::lbl::genome::gui::VistaCurveView |  [inline] | 
  | getStatistics() | gov::lbl::genome::gui::VistaCurveView |  [inline] | 
  | getWidth() | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | graphView (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | height (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | lineNumber (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | marginLeft (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | marginRight (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | marginTop (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | maxX (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | maxY (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | minX (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | minY (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | model (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | nPoints (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | param (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | printInfo(Graphics g, int margin, int marginTop) | gov::lbl::genome::gui::VistaCurveView |  [inline] | 
  | realGraphHeight (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | realGraphWidth (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | refresh(final long minX, final long maxX) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | gov::lbl::genome::gui::CurveView::refresh(long minX, long maxX) | gov::lbl::genome::gui::CurveView |  [package] | 
  | render(Graphics g) | gov::lbl::genome::gui::VistaCurveView |  [inline] | 
  | renderInitialize() | gov::lbl::genome::gui::AbstractCurveView |  [inline, protected] | 
  | reRenderOff() | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | reRenderOn() | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | setCurveModel(CurveModel model) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | setGraphView(GeneralGraphView graphView) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | setLineNumber(int line) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | setMarginLeft(int x) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | setMarginRight(int x) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | setMarginTop(int y) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | setMaxX(double x) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | setMaxY(double y) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | setMinX(double x) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | setMinY(double y) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | setSize(double width, double height) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | setStroke(Stroke stroke) | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | stroke (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | toString() | gov::lbl::genome::gui::AbstractCurveView |  [inline] | 
  | va (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | VistaCurveView(VistaCurveModel model, GeneralGraphView graphView, Color color) | gov::lbl::genome::gui::VistaCurveView |  [inline] | 
  | width (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | xDifference (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | xDisplay(int x) | gov::lbl::genome::gui::AbstractCurveView |  [inline, protected] | 
  | xPoints (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | yDifference (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] | 
  | yPoints (defined in gov::lbl::genome::gui::AbstractCurveView) | gov::lbl::genome::gui::AbstractCurveView |  [protected] |