Here is a list of all documented class members with links to the class documentation for each member:
- AboutAction()
: gov::lbl::genome::gui::action::AboutAction
- aboutAction
: gov::lbl::genome::gui::VistaApp
- AbstractActionDialogPanel()
: gov::lbl::genome::gui::panel::AbstractActionDialogPanel
- AbstractCurveModel()
: gov::lbl::genome::common::AbstractCurveModel
- ActionDialog()
: gov::lbl::genome::gui::dialog::ActionDialog
- actionPerformed()
: gov::lbl::genome::gui::action::VAbstractAction, gov::lbl::genome::gui::action::ForwardAction, gov::lbl::genome::gui::action::BackAction, gnu::jpdf::PDFTest
- add()
: gov::lbl::genome::gui::panel::GraphViewList, gov::lbl::genome::common::features::ChromSegment, gnu::jpdf::PDFPageList, gnu::jpdf::PDFPage::procset, gnu::jpdf::PDFPage, gnu::jpdf::PDFOutline, gnu::jpdf::PDFDocument, gnu::jpdf::BoundingBox
- Add_ChromSegment()
: gov::lbl::genome::common::features::ChromSegments
- AddAction()
: gov::lbl::genome::gui::action::AddAction
- addAction
: gov::lbl::genome::gui::VistaApp
- addAnnotation()
: gnu::jpdf::PDFPage
- addCurve()
: gov::lbl::genome::gui::GeneralGraphView, gov::lbl::genome::common::GenomeInfo, gov::lbl::genome::common::GeneralGraphModel
- addCurves()
: gov::lbl::genome::gui::panel::DisplayPanel
- addDefaultCurve()
: gov::lbl::genome::gui::panel::DisplayPanel
- addElement()
: gov::lbl::genome::gui::panel::GraphViewList
- addGraph()
: gov::lbl::genome::gui::panel::DisplayPanel
- addImage()
: ranab::img::gif::GifImage
- addLayoutComponent()
: layout::TableLayout
- addLink()
: gnu::jpdf::PDFPage
- addNote()
: gnu::jpdf::PDFPage, gnu::jpdf::PDFJob
- addOutline()
: gnu::jpdf::PDFPage, gnu::jpdf::PDFJob
- addPoint()
: gov::lbl::genome::common::CurveModel, gov::lbl::genome::common::AbstractCurveModel
- addPrintedGraph()
: gov::lbl::genome::gui::panel::DisplayPanel
- addResource()
: gnu::jpdf::PDFPage
- addXObject()
: gnu::jpdf::PDFPage
- annotationLegend()
: gov::lbl::genome::gui::panel::DisplayPanel
- AnnotationPanel()
: gov::lbl::genome::gui::panel::AnnotationPanel
- AnnotationPanelPicture()
: gov::lbl::genome::gui::panel::AnnotationPanelPicture
- annotations
: gnu::jpdf::PDFPage
- arc()
: gnu::jpdf::PDFGraphics
- ArrowsPanel()
: gov::lbl::genome::gui::panel::ArrowsPanel
- AxisPanel()
: gov::lbl::genome::gui::panel::AxisPanel
- AxisPanelPicture()
: gov::lbl::genome::gui::panel::AxisPanelPicture
- calculateSize()
: layout::TableLayout
- cancelAction()
: gov::lbl::genome::gui::dialog::ActionDialog
- CENTER
: layout::TableLayoutConstants
- centerDialog()
: gov::lbl::genome::gui::dialog::VistaDialog
- changePanel()
: gov::lbl::genome::gui::dialog::VistaDialog
- changeSequence()
: ranab::util::ByteUtils
- checkCurves()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::common::CommUnit
- checkVisible()
: gov::lbl::genome::gui::GeneralGraphView
- ChromInfo()
: gov::lbl::genome::common::ChromInfo
- ChromPanel()
: gov::lbl::genome::gui::panel::ChromPanel
- ChromPanelPicture()
: gov::lbl::genome::gui::panel::ChromPanelPicture
- ChromPosition()
: gov::lbl::genome::common::features::ChromPosition
- ChromSegment()
: gov::lbl::genome::common::features::ChromSegment
- ChromSegments()
: gov::lbl::genome::common::features::ChromSegments
- clear()
: gov::lbl::genome::gui::History
- clearAll()
: gov::lbl::genome::gui::History
- clearChildren()
: gov::lbl::genome::gui::GeneralGraphView
- clearModel()
: gov::lbl::genome::gui::CurveParameters
- clearRect()
: gnu::jpdf::PDFGraphics
- clearStatus()
: gov::lbl::genome::gui::Status
- clearStatusBar()
: gov::lbl::genome::gui::VistaApp
- clipPolygon()
: gnu::jpdf::PDFGraphics
- clipRect()
: gnu::jpdf::PDFGraphics
- clipRectangle
: gnu::jpdf::PDFGraphics
- clone()
: gov::lbl::genome::gui::panel::RepeatPanel, gov::lbl::genome::gui::panel::AnnotationPanel, gov::lbl::genome::gui::AbstractCurveView
- cloneCurve()
: gov::lbl::genome::common::CurveInfo, gov::lbl::genome::common::AbstractCurveModel
- cloneSegment()
: gov::lbl::genome::common::features::ChromSegment
- close()
: gnu::jpdf::PDFOutput
- closeBlock()
: gnu::jpdf::PDFGraphics
- CodeEntry()
: ranab::img::gif::GifImage::CodeEntry
- col1
: layout::TableLayoutConstraints
- col2
: layout::TableLayoutConstraints
- collectValues()
: gov::lbl::genome::gui::panel::StatPanel, gov::lbl::genome::gui::panel::SearchResultsPanel, gov::lbl::genome::gui::panel::SaveAsPanel, gov::lbl::genome::gui::panel::ContigListPanel, gov::lbl::genome::gui::panel::AbstractActionDialogPanel
- columnOffset
: layout::TableLayout
- columnSize
: layout::TableLayout
- columnSpec
: layout::TableLayout
- Comment()
: sjg::xml::Comment
- CommUnit()
: gov::lbl::genome::common::CommUnit
- compareTo()
: gov::lbl::genome::common::features::ChromSegment
- componentResized()
: gov::lbl::genome::gui::panel::DisplayPanel
- contains()
: gov::lbl::genome::common::features::ChromSegment
- contents
: gnu::jpdf::PDFPage
- Contig()
: gov::lbl::genome::common::features::Contig
- contigLegend()
: gov::lbl::genome::gui::panel::DisplayPanel
- ContigListDialog()
: gov::lbl::genome::gui::dialog::ContigListDialog
- ContigListPanel()
: gov::lbl::genome::gui::panel::ContigListPanel
- ContigPanel()
: gov::lbl::genome::gui::panel::ContigPanel
- convertX()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::panel::VistaPanel, gov::lbl::genome::gui::panel::ChromPanelPicture, gov::lbl::genome::gui::AbstractCurveView
- convertY()
: gov::lbl::genome::gui::AbstractCurveView
- copyArea()
: gnu::jpdf::PDFGraphics
- create()
: gnu::jpdf::PDFJob::graphic, gnu::jpdf::PDFGraphics
- createBarImage()
: gov::lbl::genome::gui::panel::TracerPanel
- createGraphic()
: gnu::jpdf::PDFGraphics
- createImage()
: gov::lbl::genome::gui::panel::XAxisPanel, gov::lbl::genome::gui::panel::VistaPanel, gov::lbl::genome::gui::panel::RepeatPanel, gov::lbl::genome::gui::panel::ContigPanel, gov::lbl::genome::gui::panel::ChromPanel, gov::lbl::genome::gui::panel::AxisPanel, gov::lbl::genome::gui::panel::AnnotationPanel, gov::lbl::genome::gui::GeneralGraphView, gov::lbl::genome::gui::GeneralGraphComp
- createTracerImage()
: gov::lbl::genome::gui::panel::TracerPanel
- crossMouseCursor()
: gov::lbl::genome::gui::panel::TracerPanel
- CursorInfoPanel()
: gov::lbl::genome::gui::panel::CursorInfoPanel
- CurveInfo()
: gov::lbl::genome::common::CurveInfo
- CurveParameters()
: gov::lbl::genome::gui::CurveParameters
- curveto()
: gnu::jpdf::PDFGraphics
- curveto2()
: gnu::jpdf::PDFGraphics
- cx()
: gnu::jpdf::PDFPage
- cxy()
: gnu::jpdf::PDFPage
- cy()
: gnu::jpdf::PDFPage
- DASHED
: gnu::jpdf::PDFAnnot
- Data()
: sjg::xml::Data
- Debug()
: gov::lbl::genome::gui::panel::VGBPanel
- debug()
: gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::Debug
- debugException()
: gov::lbl::genome::gui::Debug
- debugOff()
: gov::lbl::genome::gui::Debug
- debugOn()
: gov::lbl::genome::gui::Debug
- Decrement_All()
: gov::lbl::genome::common::features::ChromSegments
- defaultMouseCursor()
: gov::lbl::genome::gui::panel::TracerPanel, gov::lbl::genome::gui::panel::ChromPanel
- defaultOutlineBorder
: gnu::jpdf::PDFDocument
- defaultSize
: layout::TableLayout
- deflate
: gnu::jpdf::PDFStream
- deleteColumn()
: layout::TableLayout
- deleteRow()
: layout::TableLayout
- descendants()
: gnu::jpdf::PDFOutline
- dest
: gnu::jpdf::PDFOutline
- destMode
: gnu::jpdf::PDFOutline
- DetailsAction()
: gov::lbl::genome::gui::action::DetailsAction
- detailsAction
: gov::lbl::genome::gui::VistaApp
- Difference()
: gov::lbl::genome::common::features::ChromSegments
- dirty
: layout::TableLayout
- disableCancelBtn()
: gov::lbl::genome::gui::dialog::ActionDialog
- disableGUI()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::gui::panel::GeneSearchPanel, gov::lbl::genome::gui::panel::BaseInfoPanel
- disableOKBtn()
: gov::lbl::genome::gui::dialog::ActionDialog
- dispatch()
: gov::lbl::genome::gui::panel::VGBPanel
- dispatchEvent()
: gov::lbl::genome::gui::panel::VGBPanel, gov::lbl::genome::gui::panel::ContigPanel, gov::lbl::genome::gui::GeneralGraphComp
- DisplayPanel()
: gov::lbl::genome::gui::panel::DisplayPanel
- dispose()
: gnu::jpdf::PDFGraphics
- Document()
: sjg::xml::Document
- draw3DRect()
: gnu::jpdf::PDFGraphics
- drawArc()
: gnu::jpdf::PDFGraphics
- drawBytes()
: gnu::jpdf::PDFGraphics
- drawChoppedString()
: gnu::jpdf::BoundingBox
- drawContent()
: gov::lbl::genome::gui::panel::XAxisPanel, gov::lbl::genome::gui::panel::RepeatPanel, gov::lbl::genome::gui::panel::DisplayPanel, gov::lbl::genome::gui::panel::ContigPanel, gov::lbl::genome::gui::panel::ChromPanel, gov::lbl::genome::gui::panel::AxisPanel, gov::lbl::genome::gui::panel::AnnotationPanel, gov::lbl::genome::gui::GeneralGraphComp
- drawGene()
: gov::lbl::genome::gui::panel::AnnotationPanelPicture
- drawGreenBar()
: gov::lbl::genome::gui::panel::TracerPanel
- drawGrid()
: layout::TableLayout
- drawImage()
: gnu::jpdf::PDFGraphics
- drawLine()
: gnu::jpdf::PDFGraphics
- drawOval()
: gnu::jpdf::PDFGraphics
- drawPicture()
: gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::panel::RepeatPanelPicture, gov::lbl::genome::gui::panel::ContigPanelPicture, gov::lbl::genome::gui::panel::ChromPanelPicture, gov::lbl::genome::gui::panel::AxisPanelPicture, gov::lbl::genome::gui::panel::AnnotationPanelPicture
- drawPolygon()
: gnu::jpdf::PDFGraphics
- drawPolyline()
: gnu::jpdf::PDFGraphics
- drawRect()
: gnu::jpdf::PDFGraphics
- drawRoundRect()
: gnu::jpdf::PDFGraphics
- drawString()
: gnu::jpdf::PDFGraphics
- drawWrappedString()
: gnu::jpdf::BoundingBox
- drawWrappedStringTruncate()
: gnu::jpdf::BoundingBox
- Gene()
: gov::lbl::genome::common::features::Gene
- GeneNotFoundException()
: gov::lbl::genome::common::GeneNotFoundException
- GeneralGraphComp()
: gov::lbl::genome::gui::GeneralGraphComp
- GeneralGraphModel()
: gov::lbl::genome::common::GeneralGraphModel
- GeneralGraphView()
: gov::lbl::genome::gui::GeneralGraphView
- generation
: gnu::jpdf::PDFXref
- GeneSearchPanel()
: gov::lbl::genome::gui::panel::GeneSearchPanel
- GenesInfo()
: gov::lbl::genome::common::GenesInfo
- GenomeInfo()
: gov::lbl::genome::common::GenomeInfo
- Get_ChromSegment()
: gov::lbl::genome::common::features::ChromSegments
- getAbsoluteLocation()
: gnu::jpdf::BoundingBox
- getAdb()
: gov::lbl::genome::common::GenomeInfo
- getAddAction()
: gov::lbl::genome::gui::VistaApp
- getAlign()
: gov::lbl::genome::common::features::Contig
- getAllCurveInfos()
: gov::lbl::genome::gui::panel::DisplayPanel
- getAllCurves()
: gov::lbl::genome::gui::panel::DisplayPanel
- getAllGraphs()
: gov::lbl::genome::gui::panel::DisplayPanel
- getAllPoints()
: gov::lbl::genome::common::CurveModel, gov::lbl::genome::common::AbstractCurveModel
- getAllSelectedGraphs()
: gov::lbl::genome::gui::panel::DisplayPanel
- getAnno()
: gov::lbl::genome::common::CommUnit
- getAnnotation()
: gov::lbl::genome::gui::Status
- getAnnotationColor()
: gov::lbl::genome::gui::panel::RepeatPanel
- getAnnotationPanel()
: gov::lbl::genome::gui::panel::DisplayPanel
- getAnnotations()
: gov::lbl::genome::gui::panel::RepeatPanel, gov::lbl::genome::gui::panel::AnnotationPanel, gov::lbl::genome::common::AbstractCurveModel
- getAttribute()
: sjg::xml::Element
- getAuthor()
: gnu::jpdf::PDFInfo
- getAvailCurves()
: gov::lbl::genome::common::CommUnit
- getBase()
: gov::lbl::genome::common::CurveInfo
- getBaseFamily()
: gov::lbl::genome::common::VistaCurveInfo
- getBaseGenome()
: gov::lbl::genome::gui::VistaApp
- getBG()
: gov::lbl::genome::gui::VistaApp
- getBlockId()
: ranab::img::gif::GifEx
- getBrowsers()
: gov::lbl::genome::common::GenomeInfo
- getCalcWindow()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::common::VistaCurveModel
- getCheckedCurves()
: gov::lbl::genome::common::GenomeInfo
- getChrom()
: gov::lbl::genome::gui::VistaApp
- getChromDX()
: gov::lbl::genome::gui::panel::DisplayPanel
- getChromInfo()
: gov::lbl::genome::common::CommUnit
- getChromName()
: gov::lbl::genome::common::features::ChromSegment
- getChromosome()
: gov::lbl::genome::common::features::ChromSegment, gov::lbl::genome::common::features::ChromPosition
- getChromSize()
: gov::lbl::genome::gui::VistaApp
- getChromX()
: gov::lbl::genome::gui::panel::TracerPanel
- getClip()
: gnu::jpdf::PDFGraphics
- getClipBounds()
: gnu::jpdf::PDFGraphics
- getCode()
: ranab::img::gif::GifImage::CodeEntry, gov::lbl::genome::common::VGBException
- getCodeEntry()
: ranab::img::gif::GifImage::GifHash
- getColor()
: ranab::img::gif::GifColor, gov::lbl::genome::gui::Parameter, gnu::jpdf::PDFGraphics
- getColorArray()
: gov::lbl::genome::gui::Parameter
- getColumn()
: layout::TableLayout
- getComment()
: ranab::img::gif::GifCommentEx, gov::lbl::genome::common::GenesInfo
- getCommentBlock()
: ranab::img::gif::GifImage
- getCommUnit()
: gov::lbl::genome::gui::VistaApp
- getComponent()
: gov::lbl::genome::gui::dialog::VistaDialog
- getConnection()
: gov::lbl::genome::gui::VistaApp
- getConsIdentity()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::common::VistaCurveModel
- getConstraints()
: layout::TableLayout
- getConsWidth()
: gov::lbl::genome::gui::VistaApp
- getContents()
: sjg::xml::Element
- getContig()
: gov::lbl::genome::common::GenomeInfo
- getContigName()
: gov::lbl::genome::common::features::Contig
- getContigNum()
: gov::lbl::genome::common::features::Contig
- getContigPanel()
: gov::lbl::genome::gui::GeneralGraphView
- getContigs()
: gov::lbl::genome::gui::VistaCurveView, gov::lbl::genome::gui::panel::ContigPanel
- getCoordinate()
: gov::lbl::genome::common::features::ChromPosition
- getCreated()
: gov::lbl::genome::common::GenesInfo
- getCreator()
: gnu::jpdf::PDFInfo
- getCurrentPage()
: gnu::jpdf::PDFJob
- getCurrentPageNumber()
: gnu::jpdf::PDFJob
- getCurrentPos()
: gov::lbl::genome::common::GenomeInfo
- getCurve()
: gov::lbl::genome::common::GenomeInfo, gov::lbl::genome::common::CommUnit
- getCurveInfo()
: gov::lbl::genome::common::AbstractCurveModel
- getCurveModel()
: gov::lbl::genome::gui::AbstractCurveView
- getCurveModels()
: gov::lbl::genome::common::GraphModel, gov::lbl::genome::common::GeneralGraphModel
- getCurveModelsCollection()
: gov::lbl::genome::common::GeneralGraphModel
- getCurveParameters()
: gov::lbl::genome::gui::Status
- getCurves()
: gov::lbl::genome::common::GenomeInfo
- getCurveViews()
: gov::lbl::genome::gui::GeneralGraphView
- getData()
: gov::lbl::genome::common::AbstractCurveModel
- getDataInterval()
: gov::lbl::genome::gui::VistaApp
- getDataUrl()
: gov::lbl::genome::common::GenomeInfo
- getDefaultBaseGenome()
: gov::lbl::genome::gui::panel::BaseInfoPanel
- getDefaultGenes()
: gov::lbl::genome::gui::VistaApp
- getDefaultGenome()
: gov::lbl::genome::gui::panel::BaseInfoPanel
- getDeflate()
: gnu::jpdf::PDFStream
- getDefPos()
: gov::lbl::genome::common::GenomeInfo
- getDelayTime()
: ranab::img::gif::GifGraphicEx
- getDescr()
: gov::lbl::genome::common::features::Gene
- getDetailsAction()
: gov::lbl::genome::gui::VistaApp
- getDialogElement()
: gov::lbl::genome::gui::VistaApp
- getDir()
: gov::lbl::genome::common::features::Contig
- getDisplayPanel()
: gov::lbl::genome::gui::VistaApp
- getDouble()
: gov::lbl::genome::gui::Parameter
- getDoubleArray()
: gov::lbl::genome::gui::Parameter
- getDrawingPoint()
: gnu::jpdf::BoundingBox
- getDs()
: gov::lbl::genome::common::features::Contig
- getDsChrom()
: gov::lbl::genome::common::features::Contig
- getDsEnd()
: gov::lbl::genome::common::features::Contig
- getDsStart()
: gov::lbl::genome::common::features::Contig
- getDsStrand()
: gov::lbl::genome::common::features::Contig
- getDX()
: gov::lbl::genome::gui::Picture
- getEnabled()
: gov::lbl::genome::gui::panel::TracerPanel
- getEnd()
: gov::lbl::genome::common::features::ChromSegment
- getEndPoint()
: gov::lbl::genome::common::CurveModel, gov::lbl::genome::common::AbstractCurveModel
- getErrorHandler()
: gov::lbl::genome::gui::VistaApp
- getFamily()
: gov::lbl::genome::common::BrowserInfo
- getFirstSelectedIndex()
: gov::lbl::genome::gui::panel::DisplayPanel
- getFont()
: gov::lbl::genome::gui::Parameter, gnu::jpdf::PDFPage, gnu::jpdf::PDFGraphics, gnu::jpdf::PDFFont, gnu::jpdf::PDFDocument
- getFontArray()
: gov::lbl::genome::gui::Parameter
- getFontMetrics()
: gnu::jpdf::PDFGraphics
- getFormattedNumberString()
: gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::panel::VistaPanel
- getFormattedXDisplayString()
: gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::panel::VistaPanel, gov::lbl::genome::gui::panel::ChromPanelPicture
- getFullString()
: gnu::jpdf::BoundingBox
- getGeneName()
: gov::lbl::genome::common::features::Gene
- getGeneralGraphView()
: gov::lbl::genome::gui::GeneralGraphView
- getGenes()
: gov::lbl::genome::common::CommUnit
- getGenesInfo()
: gov::lbl::genome::gui::VistaApp
- getGenesInfos()
: gov::lbl::genome::common::GenomeInfo
- getGenesName()
: gov::lbl::genome::gui::panel::GeneSearchPanel
- getGenome()
: gov::lbl::genome::gui::Status
- getGenomeId()
: gov::lbl::genome::common::GenomeInfo
- getGenomesIter()
: gov::lbl::genome::gui::panel::BaseInfoPanel
- getGraph()
: gov::lbl::genome::gui::panel::DisplayPanel
- getGraphComp()
: gov::lbl::genome::gui::GeneralGraphView
- getGraphHeight()
: gov::lbl::genome::gui::GeneralGraphView
- getGraphicBlock()
: ranab::img::gif::GifImage
- getGraphics()
: ranab::img::gif::GifImage, ranab::img::BaseImage, gnu::jpdf::PDFPage, gnu::jpdf::PDFJob
- getGraphModel()
: gov::lbl::genome::gui::GeneralGraphView
- getGraphName()
: gov::lbl::genome::gui::GeneralGraphView
- getGraphPanelSize()
: gov::lbl::genome::gui::panel::DisplayPanel
- getGraphPos()
: gov::lbl::genome::gui::GeneralGraphView
- getGraphView()
: gov::lbl::genome::gui::CurveView, gov::lbl::genome::gui::AbstractCurveView
- getGraphWidth()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::gui::GeneralGraphView
- getHeader()
: sjg::xml::Document
- getHeight()
: ranab::img::gif::GifScreenDescriptor, ranab::img::BaseImage, gov::lbl::genome::gui::Picture, gnu::jpdf::PDFImage
- getHistory()
: gov::lbl::genome::gui::VistaApp
- getHorizSize()
: gov::lbl::genome::gui::panel::VistaPanel
- getID()
: gov::lbl::genome::common::CustomCurveModel, gov::lbl::genome::common::AbstractGraphModel, gov::lbl::genome::common::AbstractCurveModel
- getId()
: gov::lbl::genome::common::GenomeInfo, gov::lbl::genome::common::CurveInfo
- getImage()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::panel::RepeatPanel, gov::lbl::genome::gui::panel::AxisPanel, gov::lbl::genome::gui::panel::AnnotationPanel
- getImageableHeight()
: gov::lbl::genome::gui::Picture
- getImageableWidth()
: gov::lbl::genome::gui::Picture
- getImageData()
: ranab::img::gif::GifEx
- getIndex()
: gnu::jpdf::PDFOutline
- getInitInfo()
: gov::lbl::genome::common::CommUnit
- getInputStream()
: gov::lbl::genome::gui::VistaApp
- getInt()
: gov::lbl::genome::gui::Parameter
- getIntArray()
: gov::lbl::genome::gui::Parameter
- getInterval()
: gov::lbl::genome::common::CurveModel, gov::lbl::genome::common::AbstractCurveModel
- getIntValue()
: sjg::xml::Attribute
- getInvisible()
: gov::lbl::genome::gui::panel::GraphViewList
- getIterationCount()
: ranab::img::gif::GifNsAppEx
- getKeywords()
: gnu::jpdf::PDFInfo
- getLabel()
: gov::lbl::genome::common::CurveInfo
- getLast()
: gnu::jpdf::PDFOutline
- getLastSelectedIndex()
: gov::lbl::genome::gui::panel::DisplayPanel
- getLayoutAlignmentX()
: layout::TableLayout
- getLayoutAlignmentY()
: layout::TableLayout
- getLongName()
: gov::lbl::genome::gui::GeneralGraphView, gov::lbl::genome::common::VistaCurveInfo, gov::lbl::genome::common::GenesInfo, gov::lbl::genome::common::GeneralGraphModel, gov::lbl::genome::common::CurveModel, gov::lbl::genome::common::CurveInfo, gov::lbl::genome::common::AbstractGraphModel, gov::lbl::genome::common::AbstractCurveModel
- getMarginBottom()
: gov::lbl::genome::gui::Picture
- getMarginLeft()
: gov::lbl::genome::gui::Picture
- getMarginRight()
: gov::lbl::genome::gui::Picture
- getMarginTop()
: gov::lbl::genome::gui::Picture
- getMaxHeight()
: gov::lbl::genome::gui::Picture
- getMaxWidth()
: gov::lbl::genome::gui::Picture
- getMaxX()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::gui::AbstractCurveView, gov::lbl::genome::common::AbstractGraphModel, gov::lbl::genome::common::AbstractCurveModel
- getMaxY()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::gui::AbstractCurveView, gov::lbl::genome::common::PCurveModel, gov::lbl::genome::common::AbstractGraphModel
- getMedia()
: gnu::jpdf::PDFPage
- getMethodResult()
: gov::lbl::genome::gui::dialog::VistaDialog
- getMimeType()
: ranab::img::gif::GifImage, ranab::img::BaseImage
- getMinConsWidth()
: gov::lbl::genome::common::VistaCurveModel
- getMinX()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::gui::AbstractCurveView, gov::lbl::genome::common::AbstractGraphModel, gov::lbl::genome::common::AbstractCurveModel
- getMinY()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::gui::AbstractCurveView, gov::lbl::genome::common::VistaCurveModel, gov::lbl::genome::common::PCurveModel, gov::lbl::genome::common::AbstractGraphModel
- getMode()
: gov::lbl::genome::common::VistaCurveModel
- getName()
: sjg::xml::Element, sjg::xml::Attribute, gov::lbl::genome::common::GenomeInfo, gov::lbl::genome::common::GenesInfo, gov::lbl::genome::common::GeneralGraphModel, gov::lbl::genome::common::features::ChromSegment, gov::lbl::genome::common::CurveModel, gov::lbl::genome::common::CurveInfo, gov::lbl::genome::common::ChromInfo, gov::lbl::genome::common::BrowserInfo, gov::lbl::genome::common::AbstractGraphModel, gov::lbl::genome::common::AbstractCurveModel, gnu::jpdf::PDFImage, gnu::jpdf::PDFFont
- getNewHeight()
: gov::lbl::genome::gui::VistaApp
- getNewWidth()
: gov::lbl::genome::gui::VistaApp
- getNext()
: gov::lbl::genome::gui::History
- getNode()
: gnu::jpdf::PDFOutline
- getNsApplicationBlock()
: ranab::img::gif::GifImage
- getNumberOfCurves()
: gov::lbl::genome::common::GenomeInfo
- getNumberOfGraphs()
: gov::lbl::genome::gui::panel::DisplayPanel
- getNumberOfPoints()
: gov::lbl::genome::common::CurveModel, gov::lbl::genome::common::AbstractCurveModel
- getNumberOfRows()
: gov::lbl::genome::gui::panel::BaseInfoPanel
- getNumColumn()
: layout::TableLayout
- getNumDataPoints()
: gov::lbl::genome::gui::VistaApp
- getNumRow()
: layout::TableLayout
- getObject()
: gov::lbl::genome::gui::Parameter
- getObjectArray()
: gov::lbl::genome::gui::Parameter
- getOrganisms()
: gov::lbl::genome::gui::Status, gov::lbl::genome::gui::panel::BaseInfoPanel
- getOrgId()
: gov::lbl::genome::common::VistaCurveModel, gov::lbl::genome::common::VistaCurveInfo
- getOrientation()
: gnu::jpdf::PDFPage
- getOutline()
: gnu::jpdf::PDFDocument
- getOutputStream()
: gov::lbl::genome::gui::VistaApp, gnu::jpdf::PDFStream
- getPage()
: gnu::jpdf::PDFPageList, gnu::jpdf::PDFGraphics, gnu::jpdf::PDFDocument
- getPageDimension()
: gnu::jpdf::PDFJob
- getPageResolution()
: gnu::jpdf::PDFJob
- getPanel()
: gov::lbl::genome::gui::dialog::VistaDialog
- getPanelCapacity()
: gov::lbl::genome::gui::panel::DisplayPanel
- getParam()
: gov::lbl::genome::gui::VistaApp
- getParameters()
: gov::lbl::genome::gui::Resource, gov::lbl::genome::common::AbstractCurveModel
- getParameterString()
: gov::lbl::genome::common::VistaCurveModel, gov::lbl::genome::common::CurveModel, gov::lbl::genome::common::AbstractCurveModel
- getParent()
: sjg::xml::Element, gnu::jpdf::BoundingBox
- getPassword()
: gov::lbl::genome::common::GenesInfo
- getPDFDocument()
: gnu::jpdf::PDFObject, gnu::jpdf::PDFJob
- getPDFInfo()
: gnu::jpdf::PDFDocument
- getPicture()
: gov::lbl::genome::gui::panel::RepeatPanel, gov::lbl::genome::gui::panel::ContigPanel, gov::lbl::genome::gui::panel::AxisPanel, gov::lbl::genome::gui::panel::AnnotationPanel
- getPopup()
: gov::lbl::genome::gui::panel::DisplayPanel
- getPos()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::common::features::ChromSegment
- getPosition()
: gov::lbl::genome::gui::Status, gov::lbl::genome::common::AbstractGraphModel
- getPositionString()
: gov::lbl::genome::gui::VistaApp
- getPostHeader()
: gov::lbl::genome::gui::VistaApp
- getPrev()
: gov::lbl::genome::gui::History
- getPrintHeight()
: gov::lbl::genome::gui::panel::DisplayPanel
- getPrintJob()
: gnu::jpdf::PDFJob::graphic
- getProviderName()
: gov::lbl::genome::common::VistaCurveInfo
- getProviderUrl()
: gov::lbl::genome::common::VistaCurveInfo
- getPValue()
: gov::lbl::genome::common::features::PValue
- getRandomString()
: gov::lbl::genome::gui::VistaApp
- getRealEnd()
: gov::lbl::genome::common::features::ChromSegment
- getRelX()
: gov::lbl::genome::gui::Picture
- getRemoveAction()
: gov::lbl::genome::gui::VistaApp
- getRepeatPanel()
: gov::lbl::genome::gui::panel::DisplayPanel
- getRepeats()
: gov::lbl::genome::gui::Status
- getRoot()
: sjg::xml::Document
- getRow()
: layout::TableLayout
- GetRun()
: gov::lbl::genome::common::GumbyCurveInfo
- getRun()
: gov::lbl::genome::common::VistaCurveInfo
- getRunOrg()
: gov::lbl::genome::gui::VistaCurveView, gov::lbl::genome::common::VistaCurveModel, gov::lbl::genome::common::VistaCurveInfo
- getRuns()
: gov::lbl::genome::gui::VistaApp
- getScore()
: gov::lbl::genome::common::features::PValue
- getSecondFamily()
: gov::lbl::genome::common::VistaCurveInfo
- getSelectedIndices()
: gov::lbl::genome::gui::panel::DisplayPanel
- getSelectedOrg()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::gui::panel::BaseInfoPanel
- getSelectedRadio()
: gov::lbl::genome::gui::dialog::VistaDialog
- getSequence()
: gov::lbl::genome::common::features::ChromPosition
- getSerialID()
: gnu::jpdf::PDFObject
- getSettingsAction()
: gov::lbl::genome::gui::VistaApp
- getShow()
: gov::lbl::genome::gui::VistaApp
- getSize()
: gov::lbl::genome::common::ChromInfo
- getSrcName()
: gov::lbl::genome::common::GenesInfo
- getSrcUrl()
: gov::lbl::genome::common::GenesInfo
- getStart()
: gov::lbl::genome::common::features::ChromSegment
- getStartPoint()
: gov::lbl::genome::common::CurveModel, gov::lbl::genome::common::AbstractCurveModel
- getStatAction()
: gov::lbl::genome::gui::VistaApp
- getStatistics()
: gov::lbl::genome::gui::VistaCurveView, gov::lbl::genome::gui::panel::DisplayPanel, gov::lbl::genome::gui::GeneralGraphView
- getStrand()
: gov::lbl::genome::common::features::Contig
- getStream()
: gnu::jpdf::PDFStream
- getString()
: gov::lbl::genome::gui::Parameter
- getStringArray()
: gov::lbl::genome::gui::Parameter, gnu::jpdf::BoundingBox
- getStringBounds()
: gnu::jpdf::BoundingBox
- getStringWidth()
: gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::panel::VistaPanel
- getStyle()
: gnu::jpdf::PDFFont
- getSubject()
: gnu::jpdf::PDFInfo
- getSuperContigNum()
: gov::lbl::genome::common::features::SuperContig
- getTableName()
: gov::lbl::genome::common::GenesInfo
- getTestgpvParam()
: gov::lbl::genome::gui::action::UCSCBrowserAction
- getText()
: sjg::xml::ProcessingInstruction, sjg::xml::Comment
- getTextbrowserURL()
: gov::lbl::genome::gui::VistaApp
- getTitle()
: gnu::jpdf::PDFInfo
- getTracerPanel()
: gov::lbl::genome::gui::panel::DisplayPanel
- getType()
: gov::lbl::genome::common::GenomeInfo, gov::lbl::genome::common::features::Repeat, gov::lbl::genome::common::features::PValue, gov::lbl::genome::common::CurveInfo, gov::lbl::genome::common::ChromInfo, gov::lbl::genome::common::BrowserInfo, gnu::jpdf::PDFObject, gnu::jpdf::PDFFont
- getUniqOrganisms()
: gov::lbl::genome::gui::panel::DisplayPanel
- getUp2Date()
: gov::lbl::genome::common::CommUnit
- getUrl()
: gov::lbl::genome::common::BrowserInfo
- getValue()
: sjg::xml::Attribute
- getVersion()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::common::CommUnit
- getVertSize()
: gov::lbl::genome::gui::panel::VistaPanel
- getVisible()
: gov::lbl::genome::gui::panel::GraphViewList
- getVisibleCurveNames()
: gov::lbl::genome::gui::panel::DisplayPanel
- getWidth()
: ranab::img::gif::GifScreenDescriptor, ranab::img::BaseImage, gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::AbstractCurveView, gnu::jpdf::PDFImage
- getWriter()
: gnu::jpdf::PDFStream, gnu::jpdf::PDFGraphics
- getXDisplay()
: gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::panel::VistaPanel, gov::lbl::genome::gui::panel::ChromPanelPicture
- getXType()
: gov::lbl::genome::common::GeneralGraphModel, gov::lbl::genome::common::CurveModel, gov::lbl::genome::common::AbstractCurveModel
- getXUnits()
: gov::lbl::genome::common::AbstractGraphModel
- getYLabel()
: gov::lbl::genome::common::PCurveModel, gov::lbl::genome::common::AbstractGraphModel
- getYLabelOrientation()
: gov::lbl::genome::common::AbstractGraphModel
- getYType()
: gov::lbl::genome::common::GeneralGraphModel, gov::lbl::genome::common::CurveModel, gov::lbl::genome::common::AbstractCurveModel
- getYUnits()
: gov::lbl::genome::common::AbstractGraphModel
- GifAppEx()
: ranab::img::gif::GifAppEx
- GifColor()
: ranab::img::gif::GifColor
- GifCommentEx()
: ranab::img::gif::GifCommentEx
- GifEx()
: ranab::img::gif::GifEx
- GifGraphicEx()
: ranab::img::gif::GifGraphicEx
- GifHash()
: ranab::img::gif::GifImage::GifHash
- GifImage()
: ranab::img::gif::GifImage
- GifImageDescriptor()
: ranab::img::gif::GifImageDescriptor
- GifNsAppEx()
: ranab::img::gif::GifNsAppEx
- GifScreenDescriptor()
: ranab::img::gif::GifScreenDescriptor
- graphic()
: gnu::jpdf::PDFJob::graphic
- GraphViewList()
: gov::lbl::genome::gui::panel::GraphViewList
- GumbyCurveInfo()
: gov::lbl::genome::common::GumbyCurveInfo
- r
: gnu::jpdf::PDFOutline
- rebuildPanel()
: gov::lbl::genome::gui::panel::DisplayPanel
- redispatchMouseEvent()
: gov::lbl::genome::gui::panel::TracerPanel
- refresh()
: gov::lbl::genome::gui::GraphView, gov::lbl::genome::gui::GeneralGraphView, gov::lbl::genome::gui::CurveView, gov::lbl::genome::gui::AbstractCurveView, gov::lbl::genome::common::VistaCurveModel, gov::lbl::genome::common::PCurveModel, gov::lbl::genome::common::CustomCurveModel, gov::lbl::genome::common::CurveModel
- refreshAnnotations()
: gov::lbl::genome::gui::panel::DisplayPanel
- refreshGraphs()
: gov::lbl::genome::gui::panel::DisplayPanel
- refreshOrgList()
: gov::lbl::genome::gui::VistaApp
- release()
: gov::lbl::genome::gui::VistaApp
- removeAction
: gov::lbl::genome::gui::VistaApp
- RemoveAction()
: gov::lbl::genome::gui::action::RemoveAction
- removeAll()
: gov::lbl::genome::gui::panel::GraphViewList
- removeAllElements()
: gov::lbl::genome::gui::panel::GraphViewList
- removeAllGraphs()
: gov::lbl::genome::gui::panel::DisplayPanel
- removeAllSelectedGraphs()
: gov::lbl::genome::gui::panel::DisplayPanel
- removeBarImage()
: gov::lbl::genome::gui::panel::TracerPanel
- removeChromSegment()
: gov::lbl::genome::common::features::ChromSegments
- removeCompImage()
: gov::lbl::genome::gui::GeneralGraphView
- removeDataImages()
: gov::lbl::genome::gui::panel::DisplayPanel
- removeElementAt()
: gov::lbl::genome::gui::panel::GraphViewList
- removeGraph()
: gov::lbl::genome::gui::panel::DisplayPanel
- removeImage()
: gov::lbl::genome::gui::panel::VistaPanel, gov::lbl::genome::gui::panel::TracerPanel, gov::lbl::genome::gui::GeneralGraphView, gov::lbl::genome::gui::GeneralGraphComp
- removeLayoutComponent()
: layout::TableLayout
- render()
: gov::lbl::genome::gui::VistaCurveView, gov::lbl::genome::gui::PValueCurveView, gov::lbl::genome::gui::CurveView
- renderInitialize()
: gov::lbl::genome::gui::AbstractCurveView
- repaint()
: gov::lbl::genome::gui::panel::ChromPanel
- repaintTracerPanels()
: gov::lbl::genome::gui::panel::DisplayPanel
- Repeat()
: gov::lbl::genome::common::features::Repeat
- repeatLegend()
: gov::lbl::genome::gui::panel::DisplayPanel
- RepeatPanel()
: gov::lbl::genome::gui::panel::RepeatPanel
- RepeatPanelPicture()
: gov::lbl::genome::gui::panel::RepeatPanelPicture
- replaceGraph()
: gov::lbl::genome::gui::panel::DisplayPanel
- requestAnnotations()
: gov::lbl::genome::gui::panel::RepeatPanel, gov::lbl::genome::gui::panel::AnnotationPanel
- rereadInitInfo()
: gov::lbl::genome::gui::panel::BaseInfoPanel
- reRenderOff()
: gov::lbl::genome::gui::AbstractCurveView
- reRenderOn()
: gov::lbl::genome::gui::AbstractCurveView
- reset()
: ranab::img::gif::GifImage::CodeEntry, ranab::img::gif::GifImage::GifHash, gov::lbl::genome::gui::panel::TracerPanel
- resetBaseGenome()
: gov::lbl::genome::gui::panel::BaseInfoPanel
- resetConnection()
: gov::lbl::genome::gui::VistaApp
- resetCounter1()
: gov::lbl::genome::gui::VistaApp
- resetCounter2()
: gov::lbl::genome::gui::VistaApp
- resetCounter3()
: gov::lbl::genome::gui::VistaApp
- resetDefaultBaseGenome()
: gov::lbl::genome::gui::panel::BaseInfoPanel
- resetDelay()
: ranab::img::gif::GifImage, ranab::img::gif::GifGraphicEx
- resetOrgList()
: gov::lbl::genome::gui::panel::BaseInfoPanel
- resetPicture()
: gov::lbl::genome::gui::panel::RepeatPanel, gov::lbl::genome::gui::panel::ContigPanel, gov::lbl::genome::gui::panel::AnnotationPanel
- resetPrintedGraphs()
: gov::lbl::genome::gui::panel::DisplayPanel
- resetTransparency()
: ranab::img::gif::GifImage
- resetXBorders()
: gov::lbl::genome::gui::panel::DisplayPanel
- Resource()
: gov::lbl::genome::gui::Resource
- resource
: gov::lbl::genome::gui::VistaApp
- resources
: gnu::jpdf::PDFPage
- retrieveInitInfo()
: gov::lbl::genome::gui::panel::BaseInfoPanel
- RIGHT
: layout::TableLayoutConstants
- rootID
: gnu::jpdf::PDFOutput
- rotate
: gnu::jpdf::PDFPage
- row1
: layout::TableLayoutConstraints
- row2
: layout::TableLayoutConstraints
- rowOffset
: layout::TableLayout
- rowSize
: layout::TableLayout
- rowSpec
: layout::TableLayout
- run()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::gui::panel::GeneSearchPanel, gov::lbl::genome::gui::action::ZoomOutAction, gov::lbl::genome::gui::action::ZoomInAction, gov::lbl::genome::gui::action::VAbstractAction, gov::lbl::genome::gui::action::UCSCBrowserAction, gov::lbl::genome::gui::action::SwapCurvesAction, gov::lbl::genome::gui::action::StatAction, gov::lbl::genome::gui::action::SettingsAction, gov::lbl::genome::gui::action::ScrollForwardAction, gov::lbl::genome::gui::action::ScrollBackwardAction, gov::lbl::genome::gui::action::SaveAsAction, gov::lbl::genome::gui::action::RemoveAction, gov::lbl::genome::gui::action::PrinterSetupAction, gov::lbl::genome::gui::action::PrintAction, gov::lbl::genome::gui::action::PageSetupAction, gov::lbl::genome::gui::action::HelpAction, gov::lbl::genome::gui::action::ForwardAction, gov::lbl::genome::gui::action::DetailsAction, gov::lbl::genome::gui::action::BackAction, gov::lbl::genome::gui::action::AddAction, gov::lbl::genome::gui::action::AboutAction
- SaveAsAction()
: gov::lbl::genome::gui::action::SaveAsAction
- saveAsAction
: gov::lbl::genome::gui::VistaApp
- SaveAsDialog()
: gov::lbl::genome::gui::dialog::SaveAsDialog
- SaveAsPanel()
: gov::lbl::genome::gui::panel::SaveAsPanel
- saveData()
: gov::lbl::genome::gui::action::SaveAsAction
- ScrollBackwardAction()
: gov::lbl::genome::gui::action::ScrollBackwardAction
- scrollBackwardAction
: gov::lbl::genome::gui::VistaApp
- scrollForwardAction
: gov::lbl::genome::gui::VistaApp
- ScrollForwardAction()
: gov::lbl::genome::gui::action::ScrollForwardAction
- SearchResultsDialog()
: gov::lbl::genome::gui::dialog::SearchResultsDialog
- SearchResultsPanel()
: gov::lbl::genome::gui::panel::SearchResultsPanel
- SEASCAPE
: gnu::jpdf::PDFPage
- select()
: gov::lbl::genome::gui::GeneralGraphView
- selectChildren()
: gov::lbl::genome::gui::GeneralGraphView
- selectGraph()
: gov::lbl::genome::gui::panel::DisplayPanel
- sendRequest()
: gov::lbl::genome::common::CommUnit
- set()
: ranab::img::gif::GifImage::CodeEntry
- Set_ChromSegment()
: gov::lbl::genome::common::features::ChromSegments
- setAbsoluteLocation()
: gnu::jpdf::BoundingBox
- setAnnotations()
: gov::lbl::genome::gui::panel::RepeatPanel, gov::lbl::genome::gui::panel::AnnotationPanel, gov::lbl::genome::common::AbstractCurveModel
- setApplet()
: gov::lbl::genome::gui::LinkLabel
- setArrows()
: gov::lbl::genome::gui::panel::DisplayPanel
- setAsDefault()
: gov::lbl::genome::common::CurveInfo
- setAuthor()
: gnu::jpdf::PDFInfo
- setBackground()
: ranab::img::gif::GifScreenDescriptor
- setBaseGenome()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::gui::panel::BaseInfoPanel
- setBorder()
: gnu::jpdf::PDFAnnot
- setCheckable()
: gov::lbl::genome::common::CurveInfo
- setCheckedCurves()
: gov::lbl::genome::common::GenomeInfo
- setChrom()
: gov::lbl::genome::gui::VistaApp
- setChromosome()
: gov::lbl::genome::common::features::ChromSegment
- setClip()
: gnu::jpdf::PDFGraphics
- setCodeBaseURL()
: gov::lbl::genome::common::CommUnit
- setColor()
: gnu::jpdf::PDFGraphics
- setColumn()
: layout::TableLayout
- setComment()
: ranab::img::gif::GifCommentEx
- setComponent()
: gov::lbl::genome::gui::Picture
- setComponentsAction()
: gov::lbl::genome::gui::dialog::VistaDialog
- setCompSize()
: gov::lbl::genome::gui::GeneralGraphComp
- setConstraints()
: layout::TableLayout
- setContig()
: gov::lbl::genome::gui::panel::CursorInfoPanel, gov::lbl::genome::gui::panel::BaseInfoPanel, gov::lbl::genome::common::GenomeInfo
- setContigs()
: gov::lbl::genome::gui::panel::ContigPanel, gov::lbl::genome::gui::GeneralGraphView
- setCreator()
: gnu::jpdf::PDFInfo
- setCurrentPos()
: gov::lbl::genome::common::GenomeInfo
- setCurveInfo()
: gov::lbl::genome::common::AbstractCurveModel
- setCurveModel()
: gov::lbl::genome::gui::CurveView, gov::lbl::genome::gui::AbstractCurveView
- setCurveModels()
: gov::lbl::genome::common::GeneralGraphModel
- setDangerous()
: gov::lbl::genome::gui::VistaApp
- setData()
: gov::lbl::genome::common::AbstractCurveModel
- setDebug()
: gov::lbl::genome::gui::Resource, gov::lbl::genome::gui::Picture
- setDebugExceptions()
: gov::lbl::genome::gui::Debug
- setDebugLevel()
: gov::lbl::genome::gui::VistaApp
- setDebugMode()
: gov::lbl::genome::gui::Debug
- setDefaultBaseGenome()
: gov::lbl::genome::gui::panel::BaseInfoPanel
- setDefaultLineWidth()
: gnu::jpdf::PDFGraphics
- setDeflate()
: gnu::jpdf::PDFStream
- setDelay()
: ranab::img::gif::GifImage, ranab::img::gif::GifGraphicEx
- setDeleted()
: gov::lbl::genome::common::GenomeInfo, gov::lbl::genome::common::CurveInfo
- setDetails()
: gov::lbl::genome::gui::panel::DisplayPanel
- setDetailsActionEnabled()
: gov::lbl::genome::gui::VistaApp
- setDragged()
: gov::lbl::genome::gui::panel::TracerPanel
- setDsEnd()
: gov::lbl::genome::common::features::Contig
- setDsStart()
: gov::lbl::genome::common::features::Contig
- setElementAt()
: gov::lbl::genome::gui::panel::GraphViewList
- setEnd()
: gov::lbl::genome::common::features::ChromSegment
- setFixedRows()
: gov::lbl::genome::gui::panel::DisplayPanel
- setFont()
: gnu::jpdf::PDFGraphics
- setForwardBackBtns()
: gov::lbl::genome::gui::VistaApp
- setFullString()
: gnu::jpdf::BoundingBox
- setGraphModel()
: gov::lbl::genome::gui::GeneralGraphView
- setGraphPos()
: gov::lbl::genome::gui::GeneralGraphView
- setGraphView()
: gov::lbl::genome::gui::CurveView, gov::lbl::genome::gui::AbstractCurveView
- setHeight()
: gnu::jpdf::PDFImage
- setImage()
: gov::lbl::genome::gui::panel::VistaPanel, gnu::jpdf::PDFImage
- setImageableArea()
: gov::lbl::genome::gui::Picture
- setImageName()
: gnu::jpdf::PDFDocument
- setIterationCount()
: ranab::img::gif::GifNsAppEx, ranab::img::gif::GifImage
- setKeywords()
: gnu::jpdf::PDFInfo
- setLineNumber()
: gov::lbl::genome::gui::AbstractCurveView
- setLineWidth()
: gnu::jpdf::PDFGraphics
- setLink()
: gov::lbl::genome::gui::LinkLabel
- setLocation()
: gov::lbl::genome::gui::SplashWindow, gov::lbl::genome::gui::dialog::VistaDialog, gov::lbl::genome::gui::dialog::ActionDialog
- setLongName()
: gov::lbl::genome::common::GeneralGraphModel, gov::lbl::genome::common::AbstractGraphModel
- setMarginLeft()
: gov::lbl::genome::gui::AbstractCurveView
- setMarginRight()
: gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::AbstractCurveView
- setMargins()
: gov::lbl::genome::gui::Picture
- setMarginTop()
: gov::lbl::genome::gui::AbstractCurveView
- setMaxX()
: gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::AbstractCurveView
- setMaxY()
: gov::lbl::genome::gui::AbstractCurveView, gov::lbl::genome::common::PCurveModel, gov::lbl::genome::common::AbstractGraphModel
- setMedia()
: gnu::jpdf::PDFPage
- setMinMaxX()
: gov::lbl::genome::gui::Picture
- setMinX()
: gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::AbstractCurveView
- setMinY()
: gov::lbl::genome::gui::AbstractCurveView, gov::lbl::genome::common::VistaCurveModel, gov::lbl::genome::common::PCurveModel, gov::lbl::genome::common::AbstractGraphModel
- setName()
: gov::lbl::genome::gui::GeneralGraphView, gov::lbl::genome::common::GeneralGraphModel, gov::lbl::genome::common::AbstractGraphModel, gnu::jpdf::PDFImage
- setNewHeight()
: gov::lbl::genome::gui::VistaApp
- setNewSize()
: gov::lbl::genome::gui::VistaApp
- setNewWidth()
: gov::lbl::genome::gui::VistaApp
- setOrgLabel()
: gov::lbl::genome::gui::VistaApp, gov::lbl::genome::gui::panel::BaseInfoPanel
- setOrgList()
: gov::lbl::genome::gui::panel::BaseInfoPanel
- setOrientation()
: gnu::jpdf::PDFPage, gnu::jpdf::PDFGraphics
- setOutline()
: gnu::jpdf::PDFCatalog
- setPage()
: gov::lbl::genome::gui::Picture
- setPaintMode()
: gnu::jpdf::PDFGraphics
- setParam()
: gov::lbl::genome::gui::VistaApp
- setParent()
: gov::lbl::genome::gui::GeneralGraphView, gnu::jpdf::BoundingBox
- setPDFInfo()
: gnu::jpdf::PDFDocument
- setPosition()
: gov::lbl::genome::gui::panel::CursorInfoPanel, gov::lbl::genome::common::AbstractGraphModel
- setPositionString()
: gov::lbl::genome::gui::VistaApp
- setPrintCapacity()
: gov::lbl::genome::gui::panel::DisplayPanel
- setReady()
: gov::lbl::genome::gui::VistaApp
- setRealChrom()
: gov::lbl::genome::common::features::ChromSegment
- setRegion()
: gov::lbl::genome::gui::panel::GeneSearchPanel
- setRow()
: layout::TableLayout
- setSelected()
: gov::lbl::genome::gui::GeneralGraphView
- setSelectedIndices()
: gov::lbl::genome::gui::panel::DisplayPanel
- setServletURL()
: gov::lbl::genome::common::CommUnit
- setSettings()
: gov::lbl::genome::gui::panel::DisplayPanel
- setSettingsVisible()
: gov::lbl::genome::gui::VistaApp
- setSize()
: gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::AbstractCurveView
- setStart()
: gov::lbl::genome::common::features::ChromSegment
- setStringArray()
: gnu::jpdf::BoundingBox
- setStroke()
: gov::lbl::genome::gui::AbstractCurveView
- setSubject()
: gnu::jpdf::PDFInfo
- setText()
: gov::lbl::genome::gui::LinkLabel
- setThumbnail()
: gnu::jpdf::PDFPage
- settingsAction
: gov::lbl::genome::gui::VistaApp
- SettingsAction()
: gov::lbl::genome::gui::action::SettingsAction
- setTip()
: gov::lbl::genome::gui::action::UCSCBrowserAction
- setTitle()
: gnu::jpdf::PDFInfo
- setTracerPanel()
: gov::lbl::genome::gui::panel::DisplayPanel
- setTransparency()
: ranab::img::gif::GifImage, ranab::img::gif::GifGraphicEx
- setUCSCActionTip()
: gov::lbl::genome::gui::VistaApp
- setVisible()
: gov::lbl::genome::gui::GeneralGraphView, gov::lbl::genome::common::CurveInfo
- setWidth()
: gnu::jpdf::PDFImage
- setXBorders()
: gov::lbl::genome::gui::panel::DisplayPanel
- setXORMode()
: gnu::jpdf::PDFGraphics
- setYLabel()
: gov::lbl::genome::common::AbstractGraphModel
- setYLabelOrientation()
: gov::lbl::genome::common::AbstractGraphModel
- setZ()
: gov::lbl::genome::gui::Picture
- shortenString()
: gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::panel::VistaPanel
- show()
: gov::lbl::genome::common::AbstractCurveModel
- showCursor()
: gov::lbl::genome::gui::panel::TracerPanel
- showGraph()
: gov::lbl::genome::gui::panel::DisplayPanel
- size()
: gov::lbl::genome::gui::panel::GraphViewList
- SOLID
: gnu::jpdf::PDFAnnot
- sort()
: gov::lbl::genome::gui::QSortAlgorithm
- SplashWindow()
: gov::lbl::genome::gui::SplashWindow
- startProgress()
: gov::lbl::genome::gui::VistaApp
- statAction
: gov::lbl::genome::gui::VistaApp
- StatAction()
: gov::lbl::genome::gui::action::StatAction
- StatDialog()
: gov::lbl::genome::gui::dialog::StatDialog
- StatPanel()
: gov::lbl::genome::gui::panel::StatPanel
- Status()
: gov::lbl::genome::gui::Status
- stopProgress()
: gov::lbl::genome::gui::VistaApp
- StringInputStream()
: gov::lbl::genome::common::StringInputStream
- StringTooLongException()
: gnu::jpdf::StringTooLongException
- subtract()
: gnu::jpdf::BoundingBox
- SUBTRACT_FROM_BOTTOM
: gnu::jpdf::BoundingBox
- SUBTRACT_FROM_LEFT
: gnu::jpdf::BoundingBox
- SUBTRACT_FROM_RIGHT
: gnu::jpdf::BoundingBox
- SUBTRACT_FROM_TOP
: gnu::jpdf::BoundingBox
- SuperContig()
: gov::lbl::genome::common::features::SuperContig
- swapCurves()
: gov::lbl::genome::gui::VistaApp
- SwapCurvesAction()
: gov::lbl::genome::gui::action::SwapCurvesAction
- swapCurvesAction
: gov::lbl::genome::gui::VistaApp
- swapElements()
: gov::lbl::genome::gui::panel::GraphViewList
- swapGraphs()
: gov::lbl::genome::gui::panel::DisplayPanel
- t
: gnu::jpdf::PDFOutline
- TableLayout()
: layout::TableLayout
- TableLayoutConstraints()
: layout::TableLayoutConstraints
- testPosition()
: gov::lbl::genome::gui::VistaApp
- thumbnail
: gnu::jpdf::PDFPage
- toArray()
: gnu::jpdf::PDFObject
- TOP
: layout::TableLayoutConstants
- toString()
: sjg::xml::ProcessingInstruction, sjg::xml::Element, sjg::xml::Document, sjg::xml::Data, sjg::xml::Comment, layout::TableLayoutConstraints, layout::TableLayout, gov::lbl::genome::gui::Status, gov::lbl::genome::gui::Picture, gov::lbl::genome::gui::GeneralGraphView, gov::lbl::genome::gui::GeneralGraphComp, gov::lbl::genome::gui::CurveParameters, gov::lbl::genome::gui::AbstractCurveView, gov::lbl::genome::common::VistaCurveInfo, gov::lbl::genome::common::GenomeInfo, gov::lbl::genome::common::GenesInfo, gov::lbl::genome::common::features::SuperContig, gov::lbl::genome::common::features::Repeat, gov::lbl::genome::common::features::PValue, gov::lbl::genome::common::features::Gene, gov::lbl::genome::common::features::Contig, gov::lbl::genome::common::features::ChromSegment, gov::lbl::genome::common::CurveInfo, gov::lbl::genome::common::ChromInfo, gov::lbl::genome::common::BrowserInfo, gnu::jpdf::PDFXref, gnu::jpdf::PDFObject
- touches()
: gov::lbl::genome::common::features::ChromSegment
- TracerPanel()
: gov::lbl::genome::gui::panel::TracerPanel
- translate()
: gov::lbl::genome::gui::Picture, gnu::jpdf::PDFGraphics
- trax
: gnu::jpdf::PDFGraphics
- tray
: gnu::jpdf::PDFGraphics
- waitMouseCursor()
: gov::lbl::genome::gui::panel::TracerPanel
- westMouseCursor()
: gov::lbl::genome::gui::panel::ChromPanel
- windowClosing()
: gov::lbl::genome::gui::VistaApp
- write()
: ranab::img::gif::GifScreenDescriptor, ranab::img::gif::GifNsAppEx, ranab::img::gif::GifImageDescriptor, ranab::img::gif::GifGraphicEx, ranab::img::gif::GifEx, ranab::img::gif::GifCommentEx, ranab::img::gif::GifColor, gnu::jpdf::PDFStream, gnu::jpdf::PDFPageList, gnu::jpdf::PDFPage::procset, gnu::jpdf::PDFPage, gnu::jpdf::PDFOutput, gnu::jpdf::PDFOutline, gnu::jpdf::PDFObject, gnu::jpdf::PDFInfo, gnu::jpdf::PDFImage, gnu::jpdf::PDFFont, gnu::jpdf::PDFDocument, gnu::jpdf::PDFCatalog, gnu::jpdf::PDFBorder, gnu::jpdf::PDFAnnot
- writeblock()
: gnu::jpdf::PDFOutput
- writeEnd()
: gnu::jpdf::PDFObject
- writeStart()
: gnu::jpdf::PDFObject
- writeStream()
: gnu::jpdf::PDFStream, gnu::jpdf::PDFImage
Generated on Wed Jan 19 16:58:06 2005 by
1.3.9.1