gov::lbl::genome::gui::panel::AnnotationPanel Class Reference

Inheritance diagram for gov::lbl::genome::gui::panel::AnnotationPanel:

[legend]Collaboration diagram for gov::lbl::genome::gui::panel::AnnotationPanel:

[legend]List of all members.

Public Member Functions
	AnnotationPanel (VistaApp vapp)
	AnnotationPanel (VistaApp vapp, PageFormat pf)
synchronized void	setAnnotations (Vector annotations)
synchronized Vector	getAnnotations ()
BufferedImage	getImage ()
BufferedImage	getImage (int i)
void	requestAnnotations (final String chromosome, final long start, final long end)
void	drawContent (Graphics g)
void	drawContent (Graphics g, PageFormat pf, int line)
AnnotationPanelPicture	getPicture ()
Graphics2D	createImage ()
Object	clone ()
void	resetPicture ()
Public Attributes
int	GENE_Y_POS = 10
int	GENE_NAME_OFFSET = 10
int	ANNOTATION_HEIGHT = 5
Package Attributes
ChromSegment[]	annotLookup
String	src = "genes"
CommUnit	cu = null
String	old_chromosome = ""
long	old_start = 0
long	old_end = 0

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Detailed Description

Title: AnnotationPanel

Description: Draw annotation picture

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

Author:

Michael Teplitskiy

Version:

1.0

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Constructor & Destructor Documentation

gov::lbl::genome::gui::panel::AnnotationPanel::AnnotationPanel (  VistaApp  vapp  )  [inline]

AnnotationPanel Parameters: vapp  VistaApp

gov::lbl::genome::gui::panel::AnnotationPanel::AnnotationPanel (  VistaApp  vapp, PageFormat  pf )  [inline]

AnnotationPanel Parameters: vapp  VistaApp pf  PageFormat

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Member Function Documentation

Object gov::lbl::genome::gui::panel::AnnotationPanel::clone (   )  [inline]

clone the panel Returns: Object

Graphics2D gov::lbl::genome::gui::panel::AnnotationPanel::createImage (   )  [inline]

create annotation Image Returns: Graphics2D Reimplemented from gov::lbl::genome::gui::panel::VistaPanel.

void gov::lbl::genome::gui::panel::AnnotationPanel::drawContent (  Graphics  g, PageFormat  pf, int  line )  [inline]

draw Content Parameters: g  Graphics pf  PageFormat line  int

void gov::lbl::genome::gui::panel::AnnotationPanel::drawContent (  Graphics  g  )  [inline]

draw Content Parameters: g  Graphics

synchronized Vector gov::lbl::genome::gui::panel::AnnotationPanel::getAnnotations (   )  [inline]

return Annotations Returns: Vector

BufferedImage gov::lbl::genome::gui::panel::AnnotationPanel::getImage (  int  i  )  [inline]

return pictures Image Parameters: i  int Returns: BufferedImage

BufferedImage gov::lbl::genome::gui::panel::AnnotationPanel::getImage (   )  [inline]

return pictures Image Returns: BufferedImage

AnnotationPanelPicture gov::lbl::genome::gui::panel::AnnotationPanel::getPicture (   )  [inline]

return annotation Picture Returns: AnnotationPanelPicture

void gov::lbl::genome::gui::panel::AnnotationPanel::requestAnnotations (  final String  chromosome, final long  start, final long  end )  [inline]

request Annotations from the server Parameters: chromosome  String start  long end  long See also: gov.lbl.genome.common.CommUnit::getAnno(String, String, String, String, String)

void gov::lbl::genome::gui::panel::AnnotationPanel::resetPicture (   )  [inline]

reset annotation Picture

synchronized void gov::lbl::genome::gui::panel::AnnotationPanel::setAnnotations (  Vector  annotations  )  [inline]

set Annotations Parameters: annotations  Vector

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The documentation for this class was generated from the following file:

• /home/teplitski/Projects/vgb2/src/gov/lbl/genome/gui/panel/AnnotationPanel.java

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