gov::lbl::genome::gui::VistaApp Class Reference

Collaboration diagram for gov::lbl::genome::gui::VistaApp:


Public Member Functions
	VistaApp ()
CommUnit	getCommUnit ()
ErrorHandler	getErrorHandler ()
boolean	updatePosition ()
boolean	updatePosition (long minX, long maxX)
String	getChrom (String posString) throws Exception
long	getMinX (String posString) throws Exception
long	getMaxX (String posString) throws Exception
boolean	updatePosition (String position)
boolean	updatePosition (String chrom, long minX, long maxX)
boolean	isChrom ()
String	getPositionString ()
void	setPositionString (String chr, String min, String max) throws Exception
void	setPositionString (String string) throws Exception
void	lastPosition ()
void	nextPosition ()
void	pushInHistory ()
void	setForwardBackBtns ()
GenomeInfo	getBaseGenome ()
String	getSelectedOrg ()
void	setOrgLabel (int org)
void	setBaseGenome (GenomeInfo baseGenome)
long	getMinX ()
long	getMaxX ()
long	getMinX (int i)
long	getMaxX (int i)
int	getConsIdentity ()
int	getCalcWindow ()
int	getMinY ()
int	getMinY (CurveInfo curve)
int	getMaxY ()
int	getMaxY (CurveInfo curve)
int	getConsWidth ()
boolean	isDefaultVisible ()
void	setChrom (String chr)
String	getChrom ()
HttpURLConnection	getConnection ()
InputStream	getInputStream ()
void	resetConnection ()
GenesInfo[]	getGenesInfo ()
String	getDefaultGenes ()
OutputStream	getOutputStream (String type)
Image	getImage (String name)
String	getTextbrowserURL ()
String	getRuns ()
String	getPos ()
String	getShow ()
String	getBG ()
void	printStatusBar (String s)
void	clearStatusBar ()
void	stopProgress ()
void	startProgress (final String desc)
void	init ()
int	getDataInterval ()
int	getNumDataPoints ()
int	getGraphWidth ()
int	convertX (long X, int line, int offset, int width)
int	convertX (double X, int line, int offset, int width)
void	updateCurrPosition (String s)
void	updateContig (String s)
DisplayPanel	getDisplayPanel ()
AbstractAction	getDetailsAction ()
void	setDetailsActionEnabled (boolean flag)
AbstractAction	getSettingsAction ()
AbstractAction	getRemoveAction ()
AbstractAction	getStatAction ()
String	getVersion ()
void	enableGUI ()
void	disableGUI ()
void	setParam (String param, Object val)
String	getParam (String parName, String defValue)
int	getParam (String parName, int defValue)
long	getChromSize (final String chr) throws VGBException
long	getChromSize () throws VGBException
synchronized void	release ()
synchronized void	setReady (boolean f)
synchronized boolean	isReady ()
void	run ()
void	upDate ()
void	windowClosing (WindowEvent e)
void	windowClosed (WindowEvent e)
void	windowOpened (WindowEvent e)
void	windowIconified (WindowEvent e)
void	windowDeiconified (WindowEvent e)
void	windowActivated (WindowEvent e)
void	windowDeactivated (WindowEvent e)
synchronized void	resetCounter1 ()
synchronized void	resetCounter2 ()
synchronized void	resetCounter3 ()
synchronized boolean	isIdle1 ()
synchronized boolean	isIdle2 ()
synchronized boolean	isIdle3 ()
synchronized void	freezeCounters (boolean f)
AbstractAction	getAddAction ()
void	checkCurves (final String pos)
void	refreshOrgList ()
History	getHistory ()
SwapCurvesAction	getSwapCurvesAction ()
void	swapCurves () throws Exception
void	setUCSCActionTip (String tip)
void	testPosition (int minx, int maxx)
Element	getDialogElement (String name)
boolean	setNewSize (int width, int height)
synchronized void	setNewWidth (int nw)
synchronized void	setNewHeight (int nh)
synchronized int	getNewWidth ()
synchronized int	getNewHeight ()
void	setSettingsVisible (boolean b)
void	enablePrinting (boolean key)
synchronized void	setDangerous (boolean d)
synchronized boolean	isDangerous ()
String	getPostHeader ()
Static Public Member Functions
void	setDebugLevel (String dLevel)
String	getRandomString (int length)
Public Attributes
Resource	resource = null
boolean	cuready = false
boolean	started = true
boolean	canResize = false
boolean	useParameters = true
GeneSearchPanel	geneSearchPanel = null
PrinterJob	printJob = null
PageFormat	pageFormat = null
Paper	paper = null
String	scrollbar
Static Public Attributes
final String	RELEASE_DATE = "2005-01-10"
boolean	debugInit = false
boolean	debugComm = false
boolean	debugProgress = false
boolean	debugAction = false
Image	legend = null
boolean	debugException
Package Attributes
VistaApp	va = null
AbstractAction	scrollBackwardAction
AbstractAction	scrollForwardAction
AbstractAction	backAction
AbstractAction	forwardAction
AbstractAction	zoomInAction
AbstractAction	zoomOutAction
AbstractAction	ucscAction
AbstractAction	detailsAction
AbstractAction	settingsAction
AbstractAction	addAction
AbstractAction	removeAction
AbstractAction	helpAction
AbstractAction	aboutAction
AbstractAction	printAction
AbstractAction	printerSetupAction
AbstractAction	pageSetupAction
AbstractAction	saveAsAction
AbstractAction	statAction
AbstractAction	swapCurvesAction
AbstractAction	scrollBackwardAction2
AbstractAction	scrollForwardAction2
AbstractAction	backAction2
AbstractAction	forwardAction2
AbstractAction	zoomInAction2
AbstractAction	zoomOutAction2
AbstractAction	ucscAction2
AbstractAction	detailsAction2
AbstractAction	settingsAction2
AbstractAction	addAction2
AbstractAction	removeAction2
AbstractAction	helpAction2
AbstractAction	aboutAction2
AbstractAction	printAction2
AbstractAction	pageSetupAction2
AbstractAction	saveAsAction2
AbstractAction	statAction2
AbstractAction	addAction3

Detailed Description

Title: VistaApp

Description: The entry point into the UI. This is a singleton classs.

Company: LBNL

Author:: Michael Teplitsky, Lila Tretikov

Version:: 2.0

Constructor & Destructor Documentation

gov::lbl::genome::gui::VistaApp::VistaApp ( ) [inline]

VistaApp is the main class of the applet

Member Function Documentation

void gov::lbl::genome::gui::VistaApp::checkCurves ( final String pos ) [inline]

Method checkCurves starts separate thread, check curves for visibility and set visibility rules for displayed curves

Parameters:

pos String

See also:
gov.lbl.genome.common.CommUnit::checkCurves(Vector, String)

void gov::lbl::genome::gui::VistaApp::clearStatusBar ( ) [inline]

remove any text from the status bar

int gov::lbl::genome::gui::VistaApp::convertX ( double X,

int line,

int offset,

int width

) [inline]

convert chromosome coordinate into screen coordinate, according to the line number, offset and panel width

Parameters:

X double

line int

offset int

width int

Returns:
int

int gov::lbl::genome::gui::VistaApp::convertX ( long X,

int line,

int offset,

int width

) [inline]

convert chromosome coordinate into screen coordinate,
Parameters:

X double

line int

offset int

width int

Returns:
int

See also:
convertX(double,int,int,int)

void gov::lbl::genome::gui::VistaApp::disableGUI ( ) [inline]

call setEnabled(false) for all components joined with action

void gov::lbl::genome::gui::VistaApp::enableGUI ( ) [inline]

call setEnabled(true) for all components joined with action

void gov::lbl::genome::gui::VistaApp::enablePrinting ( boolean key ) [inline]

enable or disable printing actions The only reason of using this method is bug in java 1.5

Parameters:

key boolean

See also:
gov.lbl.genome.gui.action.PrintAction::run()
gov.lbl.genome.gui.action.PrinterSetupAction::run()

synchronized void gov::lbl::genome::gui::VistaApp::freezeCounters ( boolean f ) [inline]

Stop applet timer

Parameters:

f boolean

AbstractAction gov::lbl::genome::gui::VistaApp::getAddAction ( ) [inline]

return addAction3

Returns:
AbstractAction

GenomeInfo gov::lbl::genome::gui::VistaApp::getBaseGenome ( ) [inline]

get baseGenome

Returns:
GenomeInfo

String gov::lbl::genome::gui::VistaApp::getBG ( ) [inline]

return base genome name

Returns:
String

int gov::lbl::genome::gui::VistaApp::getCalcWindow ( ) [inline]

return calc. window (parameter "window")

Returns:
int

String gov::lbl::genome::gui::VistaApp::getChrom ( ) [inline]

return current chromosome

Returns:
String

String gov::lbl::genome::gui::VistaApp::getChrom ( String posString ) throws Exception [inline]

try to extract chromosome name from the position string

Parameters:

posString String

Returns:
long

Exceptions:

Exception

long gov::lbl::genome::gui::VistaApp::getChromSize ( ) throws VGBException [inline]

return size of current chromosome or contig

Returns:
long

Exceptions:

VGBException

long gov::lbl::genome::gui::VistaApp::getChromSize ( final String chr ) throws VGBException [inline]

Return chromosome size. First try to find chromosome info in the applet records, id failed, try to ask server about the chromosome.

Parameters:

chr String

Returns:
long

Exceptions:

VGBException

CommUnit gov::lbl::genome::gui::VistaApp::getCommUnit ( ) [inline]

return a CommUnit object

Returns:
CommUnit

HttpURLConnection gov::lbl::genome::gui::VistaApp::getConnection ( ) [inline]

return connection field

Returns:
HttpURLConnection

int gov::lbl::genome::gui::VistaApp::getConsIdentity ( ) [inline]

return cons. identity (parameter "min_id")

Returns:
int

int gov::lbl::genome::gui::VistaApp::getConsWidth ( ) [inline]

return minConsWidth

Returns:
int

int gov::lbl::genome::gui::VistaApp::getDataInterval ( ) [inline]

return interval between two pixils

Returns:
int

String gov::lbl::genome::gui::VistaApp::getDefaultGenes ( ) [inline]

getDefaultGenes

Returns:
String

AbstractAction gov::lbl::genome::gui::VistaApp::getDetailsAction ( ) [inline]

return detailsAction2

Returns:
AbstractAction

See also:
gov.lbl.genome.gui.action.DetailsAction

Element gov::lbl::genome::gui::VistaApp::getDialogElement ( String name ) [inline]

Retern Element from XML Document from dialogs.xml

Parameters:

name String

Returns:
Element

DisplayPanel gov::lbl::genome::gui::VistaApp::getDisplayPanel ( ) [inline]

getDisplayPanel

Returns:
DisplayPanel

ErrorHandler gov::lbl::genome::gui::VistaApp::getErrorHandler ( ) [inline]

return handler of the Error Message Box

Returns:
ErrorHandler

GenesInfo [] gov::lbl::genome::gui::VistaApp::getGenesInfo ( ) [inline]

getGenesInfo

Returns:
GenesInfo[]

See also:
gov.lbl.genome.common.GenesInfo
gov.lbl.genome.common.GenomeInfo::getGenesInfos()

int gov::lbl::genome::gui::VistaApp::getGraphWidth ( ) [inline]

return adjusted width of a curve panel

Returns:
int

History gov::lbl::genome::gui::VistaApp::getHistory ( ) [inline]

Return history object

Returns:
History

Image gov::lbl::genome::gui::VistaApp::getImage ( String name ) [inline]

download image from the server

Parameters:

name String

Returns:
Image

InputStream gov::lbl::genome::gui::VistaApp::getInputStream ( ) [inline]

return InputStream from the connection

Returns:
InputStream

long gov::lbl::genome::gui::VistaApp::getMaxX ( int i ) [inline]

return maxX for "i" line

Parameters:

i int

Returns:
long

See also:
getMaxX()
getMinX(int)
getMinX()

long gov::lbl::genome::gui::VistaApp::getMaxX ( ) [inline]

return maxX

Returns:
long

See also:
getMaxX(int)
getMinX(int)
getMinX()

long gov::lbl::genome::gui::VistaApp::getMaxX ( String posString ) throws Exception [inline]

try to extract maxX from the position string

Parameters:

posString String

Returns:
long

Exceptions:

Exception

int gov::lbl::genome::gui::VistaApp::getMaxY ( CurveInfo curve ) [inline]

rerurn maxY parameter for the curve. This parameter determins maxY of the curve at startup.

Parameters:

curve CurveInfo

Returns:
int

See also:
getMinY(CurveInfo)
getMinY()

int gov::lbl::genome::gui::VistaApp::getMaxY ( ) [inline]

deturn default/actual maxY value

Returns:
int

See also:
getMinY(CurveInfo)
getMinY()

long gov::lbl::genome::gui::VistaApp::getMinX ( int i ) [inline]

return minX for "i" line

Parameters:

i int

Returns:
long

See also:
getMaxX()
getMaxX(int)
getMinX()

long gov::lbl::genome::gui::VistaApp::getMinX ( ) [inline]

return minX

Returns:
long

See also:
getMaxX(int)
getMinX(int)
getMaxX()

long gov::lbl::genome::gui::VistaApp::getMinX ( String posString ) throws Exception [inline]

try to extract minX from the position string

Parameters:

posString String

Returns:
long

Exceptions:

Exception

int gov::lbl::genome::gui::VistaApp::getMinY ( CurveInfo curve ) [inline]

rerurn minY parameter for the curve. This parameter determins minY of the curve at startup.

Parameters:

curve CurveInfo

Returns:
int

See also:
getMaxY(CurveInfo)
getMaxY()

int gov::lbl::genome::gui::VistaApp::getMinY ( ) [inline]

deturn default/actual minY value

Returns:
int

See also:
getMaxY(CurveInfo)
getMaxY()

synchronized int gov::lbl::genome::gui::VistaApp::getNewHeight ( ) [inline]

return newHeight

Returns:
int

See also:
setNewHeight(int)

synchronized int gov::lbl::genome::gui::VistaApp::getNewWidth ( ) [inline]

return newWidth

Returns:
int

See also:
setNewWidth(int)

int gov::lbl::genome::gui::VistaApp::getNumDataPoints ( ) [inline]

return expected number of data points.

Returns:
int

OutputStream gov::lbl::genome::gui::VistaApp::getOutputStream ( String type ) [inline]

return OutputStream to "POST" data to the server ToDo This method should throw an exception instead of returning something

Parameters:

type String

Returns:
OutputStream

int gov::lbl::genome::gui::VistaApp::getParam ( String parName,

int defValue

) [inline]

try to get integer from Map parameters, then from applet getParameter(String) or return default value

Parameters:

parName String

defValue int

Returns:
int

String gov::lbl::genome::gui::VistaApp::getParam ( String parName,

String defValue

) [inline]

try to get String from Map parameters, then from applet getParameter(String) or return default value

Parameters:

parName String

defValue String

Returns:
String

String gov::lbl::genome::gui::VistaApp::getPos ( ) [inline]

return position as formated string

Returns:
String

String gov::lbl::genome::gui::VistaApp::getPositionString ( ) [inline]

return formated position string

Returns:
String

String gov::lbl::genome::gui::VistaApp::getPostHeader ( ) [inline]

getPostHeader

Returns:
String

See also:
gov.lbl.genome.gui.action.SaveAsAction#saveData(OutputStream,ByteArrayOutputStream)

String gov::lbl::genome::gui::VistaApp::getRandomString ( int length ) [inline, static]

return string of specified length with rndom content

Parameters:

length int

Returns:
String

AbstractAction gov::lbl::genome::gui::VistaApp::getRemoveAction ( ) [inline]

return removeAction2

Returns:
AbstractAction

See also:
gov.lbl.genome.gui.action.RemoveAction

String gov::lbl::genome::gui::VistaApp::getRuns ( ) [inline]

return servlet-ready formated run list.

Returns:
String

String gov::lbl::genome::gui::VistaApp::getSelectedOrg ( ) [inline]

get selected organism

Returns:
String

See also:
gov.lbl.genome.gui.panel.BaseInfoPanel::getSelectedOrg()

AbstractAction gov::lbl::genome::gui::VistaApp::getSettingsAction ( ) [inline]

return settingsAction2

Returns:
AbstractAction

See also:
gov.lbl.genome.gui.action.SettingsAction

String gov::lbl::genome::gui::VistaApp::getShow ( ) [inline]

return a servlet parameter "showdefaults"

Returns:
String

AbstractAction gov::lbl::genome::gui::VistaApp::getStatAction ( ) [inline]

return statAction2

Returns:
AbstractAction

See also:
gov.lbl.genome.gui.action.StatAction

String gov::lbl::genome::gui::VistaApp::getTextbrowserURL ( ) [inline]

return URL for the text browser

Returns:
String

String gov::lbl::genome::gui::VistaApp::getVersion ( ) [inline]

getVersion

Returns:
String

void gov::lbl::genome::gui::VistaApp::init ( ) [inline]

This is an important and big method. A lot of parameters and objects are created here.

boolean gov::lbl::genome::gui::VistaApp::isChrom ( ) [inline]

return true if current contig is real chromosome

Returns:
boolean

synchronized boolean gov::lbl::genome::gui::VistaApp::isDangerous ( ) [inline]

return true if action can destroy the applet. So, the action must be disabled or delayed

Returns:
boolean

See also:
setDangerous(boolean) setDangerous(boolean)
startProgress(java.lang.String)
stopProgress()

boolean gov::lbl::genome::gui::VistaApp::isDefaultVisible ( ) [inline]

show or not to show default curves

Returns:
boolean

synchronized boolean gov::lbl::genome::gui::VistaApp::isIdle1 ( ) [inline]

return true if idle more than 20 min

Returns:
boolean

synchronized boolean gov::lbl::genome::gui::VistaApp::isIdle2 ( ) [inline]

return true if idle more than 30 sec

Returns:
boolean

synchronized boolean gov::lbl::genome::gui::VistaApp::isIdle3 ( ) [inline]

return true if idle more than 0.5 sec

Returns:
boolean

synchronized boolean gov::lbl::genome::gui::VistaApp::isReady ( ) [inline]

Returns:
boolean

See also:
setReady(boolean)

void gov::lbl::genome::gui::VistaApp::lastPosition ( ) [inline]

set status from previous position

void gov::lbl::genome::gui::VistaApp::nextPosition ( ) [inline]

set status from nextPosition

void gov::lbl::genome::gui::VistaApp::printStatusBar ( String s ) [inline]

show sring in the status bar

Parameters:

s String

void gov::lbl::genome::gui::VistaApp::pushInHistory ( ) [inline]

push curent status in history

void gov::lbl::genome::gui::VistaApp::refreshOrgList ( ) [inline]

refresh organism list in the pull-dawn menu

synchronized void gov::lbl::genome::gui::VistaApp::release ( ) [inline]

Do some work and refresh panels after slow operations, like data pulling

void gov::lbl::genome::gui::VistaApp::resetConnection ( ) [inline]

set connection to null

synchronized void gov::lbl::genome::gui::VistaApp::resetCounter1 ( ) [inline]

start 20 min counter

synchronized void gov::lbl::genome::gui::VistaApp::resetCounter2 ( ) [inline]

start 30 sec counter

synchronized void gov::lbl::genome::gui::VistaApp::resetCounter3 ( ) [inline]

start 0.5 sec min counter

void gov::lbl::genome::gui::VistaApp::run ( ) [inline]

Main thread of the applet. Doing lots of things. At start time pulls al configuration files from our server, creates important panels, creates instance of CommUnit and starts data pulling. During lifetime manages three timers and applet size. Updates information from server when the applet is idle.

void gov::lbl::genome::gui::VistaApp::setBaseGenome ( GenomeInfo baseGenome ) [inline]

set baseGenome

Parameters:

baseGenome GenomeInfo

void gov::lbl::genome::gui::VistaApp::setChrom ( String chr ) [inline]

set current chromosome

Parameters:

chr String

synchronized void gov::lbl::genome::gui::VistaApp::setDangerous ( boolean d ) [inline]

Some actions set dangerous field in true in order to disable other actions. When the action is completed it must return dangerous to false

Parameters:

d boolean

See also:
isDangerous() isDangerous()

void gov::lbl::genome::gui::VistaApp::setDebugLevel ( String dLevel ) [inline, static]

debugInit = "1" or "init" debugProgress = "2" or "progress" debugComm = "4" or "comm" debugAction = "8" or "action" debugException = "16" or "exception" debug All = 1|2|4|8|16 or "all"

Parameters:

dLevel String

void gov::lbl::genome::gui::VistaApp::setDetailsActionEnabled ( boolean flag ) [inline]

call setEnabled(boolean) for detailsAction and detailsAction2

Parameters:

flag boolean

void gov::lbl::genome::gui::VistaApp::setForwardBackBtns ( ) [inline]

Enable od disable >> or/ond << button

synchronized void gov::lbl::genome::gui::VistaApp::setNewHeight ( int nh ) [inline]

setNewHeight

Parameters:

nh int

See also:
setNewSize(int,int)

boolean gov::lbl::genome::gui::VistaApp::setNewSize ( int width,

int height

) [inline]

This method is called from JavaScript and sets new applet size. This doesn't happen in all browsers

Parameters:

width int

height int

Returns:
boolean

synchronized void gov::lbl::genome::gui::VistaApp::setNewWidth ( int nw ) [inline]

setNewWidth

Parameters:

nw int

See also:
setNewSize(int,int)

void gov::lbl::genome::gui::VistaApp::setOrgLabel ( int org ) [inline]

set orgLabel

Parameters:

org int

See also:
gov.lbl.genome.gui.panel.BaseInfoPanel::setOrgLabel(int)

void gov::lbl::genome::gui::VistaApp::setParam ( String param,

Object val

) [inline]

replace an object in the parameters Map

Parameters:

param String

val Object

void gov::lbl::genome::gui::VistaApp::setPositionString ( String string ) throws Exception [inline]

set position (chromosome, start, end) from formated string

Parameters:

string String

Exceptions:

Exception

See also:
setPositionString(String,String,String)

void gov::lbl::genome::gui::VistaApp::setPositionString ( String chr,

String min,

String max

) throws Exception [inline]

set position from parameters

Parameters:

chr String

min String

max String

Exceptions:

Exception

See also:
setPositionString(String)

synchronized void gov::lbl::genome::gui::VistaApp::setReady ( boolean f ) [inline]

Parameters:

f boolean

See also:
isReady()

void gov::lbl::genome::gui::VistaApp::setSettingsVisible ( boolean b ) [inline]

Enable or disable settings actions

Parameters:

b boolean

void gov::lbl::genome::gui::VistaApp::setUCSCActionTip ( String tip ) [inline]

Set ToolTip for UCSC action button and menu.

Parameters:

tip String

void gov::lbl::genome::gui::VistaApp::startProgress ( final String desc ) [inline]

Start RIGHT-TOP DNA Icon rotation set ready(false), stop timers, disable GUI, write comment in the status bar

Parameters:

desc String #see stopProgress()

void gov::lbl::genome::gui::VistaApp::stopProgress ( ) [inline]

Stop RIGHT-TOP DNA Icon rotation start timers, enable GUI, remove comment from the status bar

See also:
#startProgress(String)

void gov::lbl::genome::gui::VistaApp::swapCurves ( ) throws Exception [inline]

Switch base genome. Works if only one curve is selected.

Exceptions:

Exception

void gov::lbl::genome::gui::VistaApp::testPosition ( int minx,

int maxx

) [inline]

testPosition

Parameters:

minx int

maxx int

void gov::lbl::genome::gui::VistaApp::upDate ( ) [inline]

currently Not used Check server for new and deleted curves and new versions since start time.
See also:
#up2date(String)

void gov::lbl::genome::gui::VistaApp::updateContig ( String s ) [inline]

See also:
gov.lbl.genome.gui.panel.CursorInfoPanel::setContig(String)

Parameters:

s String

void gov::lbl::genome::gui::VistaApp::updateCurrPosition ( String s ) [inline]

See also:
gov.lbl.genome.gui.panel.CursorInfoPanel::setPosition(String)

Parameters:

s String

boolean gov::lbl::genome::gui::VistaApp::updatePosition ( String chrom,

long minX,

long maxX

) [inline]

updatePosition is a key method for geting curves.

Parameters:

chrom String

minX long

maxX long

Returns:
boolean

boolean gov::lbl::genome::gui::VistaApp::updatePosition ( String position ) [inline]

updatePosition is a key method for geting curves.

Parameters:

position String

Returns:
boolean

See also:
updatePosition(String,long,long)

boolean gov::lbl::genome::gui::VistaApp::updatePosition ( long minX,

long maxX

) [inline]

updatePosition is a key method for geting curves.

Parameters:

minX long

maxX long

Returns:
boolean

See also:
updatePosition(String,long,long)

boolean gov::lbl::genome::gui::VistaApp::updatePosition ( ) [inline]

updatePosition is a key method for geting curves.

Returns:
boolean

See also:
updatePosition(String,long,long)

void gov::lbl::genome::gui::VistaApp::windowClosing ( WindowEvent e ) [inline]

Stop dataPuller thread when closing

Parameters:

e WindowEvent

Member Data Documentation

AbstractAction gov::lbl::genome::gui::VistaApp::aboutAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::addAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::backAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::detailsAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::forwardAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::helpAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::pageSetupAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::printAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::printerSetupAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::removeAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

Resource gov::lbl::genome::gui::VistaApp::resource = null

This public parameter provides access to the default section of the resource file.

AbstractAction gov::lbl::genome::gui::VistaApp::saveAsAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::scrollBackwardAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::scrollForwardAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::settingsAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::statAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::swapCurvesAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::ucscAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::zoomInAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

AbstractAction gov::lbl::genome::gui::VistaApp::zoomOutAction [package]

almost all actions are duplicated because of some features that are different in Java 1.2 and older versions.

The documentation for this class was generated from the following file:

/home/teplitski/Projects/vgb2/src/gov/lbl/genome/gui/VistaApp.java

Generated on Wed Jan 19 16:59:47 2005 by

1.3.9.1

gov::lbl::genome::gui::VistaApp Class Reference

Public Member Functions

Static Public Member Functions

Public Attributes

Static Public Attributes

Package Attributes

Detailed Description

Constructor & Destructor Documentation

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