gov::lbl::genome::gui::panel::BaseInfoPanel Class Reference

Inheritance diagram for gov::lbl::genome::gui::panel::BaseInfoPanel:

[legend]Collaboration diagram for gov::lbl::genome::gui::panel::BaseInfoPanel:

[legend]List of all members.

Public Member Functions
	BaseInfoPanel (VistaApp vapp, String initStartX, String initEndX)
void	retrieveInitInfo ()
void	rereadInitInfo (HashMap g)
void	setContig (String c)
void	setDefaultBaseGenome ()
String	getDefaultBaseGenome ()
void	resetDefaultBaseGenome ()
void	setBaseGenome (final CurveInfo curve, Vector vcontigs)
void	setBaseGenome (Status status)
void	setBaseGenome (String genome)
void	setOrgList (Vector curves, Vector displayed)
void	resetOrgList ()
void	resetBaseGenome (String genome)
GenomeInfo	getDefaultGenome ()
void	enableGUI ()
void	disableGUI ()
synchronized void	setGenomes (HashMap genomes)
synchronized HashMap	getGenomes ()
synchronized Iterator	getGenomesIter ()
int	getNumberOfRows ()
String	getSelectedOrg ()
void	setOrgLabel (int org)
Vector	getOrganisms ()
Public Attributes
boolean	firstSet = true
boolean	retrieveInitInfoDone = false
Package Functions
void	uiInit (String initStartX, String initEndX) throws Exception
Package Attributes
boolean	genomeIsEmpty = false
String	selectedGenome = null
GenomeInfo	currGenome = null
CurveInfo	currCurve = null
ActionListener	genomeListAction = null
Iterator	genesIter = null
ErrorHandler	eh = null
CommUnit	cu = null

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Detailed Description

Title: BaseInfoPanel

Description: This is one of the key classes. And this is bad! Initial requests are made from this class

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

Author:

Lila Tretikov

Version:

1.0

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Constructor & Destructor Documentation

gov::lbl::genome::gui::panel::BaseInfoPanel::BaseInfoPanel (  VistaApp  vapp, String  initStartX, String  initEndX )  [inline]

BaseInfoPanel Parameters: vapp  VistaApp initStartX  String initEndX  String

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Member Function Documentation

void gov::lbl::genome::gui::panel::BaseInfoPanel::disableGUI (   )  [inline]

call setEnabled(false) for all visible components

void gov::lbl::genome::gui::panel::BaseInfoPanel::enableGUI (   )  [inline]

call setEnabled(true) for all visible components

String gov::lbl::genome::gui::panel::BaseInfoPanel::getDefaultBaseGenome (   )  [inline]

get Default Base Genome Returns: String

GenomeInfo gov::lbl::genome::gui::panel::BaseInfoPanel::getDefaultGenome (   )  [inline]

return Default Genome Returns: GenomeInfo

synchronized Iterator gov::lbl::genome::gui::panel::BaseInfoPanel::getGenomesIter (   )  [inline]

return Genomes Iterator Returns: Iterator

int gov::lbl::genome::gui::panel::BaseInfoPanel::getNumberOfRows (   )  [inline]

return number of rows or 0 Returns: int

Vector gov::lbl::genome::gui::panel::BaseInfoPanel::getOrganisms (   )  [inline]

return list of Organisms Returns: Vector

String gov::lbl::genome::gui::panel::BaseInfoPanel::getSelectedOrg (   )  [inline]

return Selected Organism Returns: String

void gov::lbl::genome::gui::panel::BaseInfoPanel::rereadInitInfo (  HashMap  g  )  [inline]

reread Init Info Parameters: g  HashMap

void gov::lbl::genome::gui::panel::BaseInfoPanel::resetBaseGenome (  String  genome  )  [inline]

reset Base Genome Parameters: genome  String

void gov::lbl::genome::gui::panel::BaseInfoPanel::resetDefaultBaseGenome (   )  [inline]

reset Default Base Genome

void gov::lbl::genome::gui::panel::BaseInfoPanel::resetOrgList (   )  [inline]

reset Org List

void gov::lbl::genome::gui::panel::BaseInfoPanel::retrieveInitInfo (   )  [inline]

retrieve Init Info

void gov::lbl::genome::gui::panel::BaseInfoPanel::setBaseGenome (  String  genome  )  [inline]

set Base Genome Parameters: genome  String

void gov::lbl::genome::gui::panel::BaseInfoPanel::setBaseGenome (  Status  status  )  [inline]

set Base Genome from status Parameters: status  Status

void gov::lbl::genome::gui::panel::BaseInfoPanel::setBaseGenome (  final CurveInfo  curve, Vector  vcontigs )  [inline]

set Base Genome Parameters: curve  CurveInfo vcontigs  Vector

void gov::lbl::genome::gui::panel::BaseInfoPanel::setContig (  String  c  )  [inline]

setText (contig name) for current contig label Parameters: c  String

void gov::lbl::genome::gui::panel::BaseInfoPanel::setDefaultBaseGenome (   )  [inline]

set Default Base Genome

void gov::lbl::genome::gui::panel::BaseInfoPanel::setOrgLabel (  int  org  )  [inline]

set OrgLabel text: number of available organisms Parameters: org  int

void gov::lbl::genome::gui::panel::BaseInfoPanel::setOrgList (  Vector  curves, Vector  displayed )  [inline]

set List of Organisms Parameters: curves  Vector displayed  Vector

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The documentation for this class was generated from the following file:

• /home/teplitski/Projects/vgb2/src/gov/lbl/genome/gui/panel/BaseInfoPanel.java

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