| BaseInfoPanel(VistaApp vapp, String initStartX, String initEndX) | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| commonParameters (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | [protected] |
| cu (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | [package] |
| currCurve (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | [package] |
| currGenome (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | [package] |
| debug (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | [static] |
| Debug(String s) | gov::lbl::genome::gui::panel::VGBPanel | [inline, protected] |
| disableGUI() | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| dispatch(MouseEvent e) | gov::lbl::genome::gui::panel::VGBPanel | [inline] |
| dispatchEvent(MouseEvent e) | gov::lbl::genome::gui::panel::VGBPanel | [inline] |
| eh (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | [package] |
| enableGUI() | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| findParentFrame() | gov::lbl::genome::gui::panel::VGBPanel | [inline] |
| firstSet (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | |
| genesIter (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | [package] |
| genomeIsEmpty (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | [package] |
| genomeListAction (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | [package] |
| getDefaultBaseGenome() | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| getDefaultGenome() | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| getGenomes() (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| getGenomesIter() | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| getNumberOfRows() | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| getOrganisms() | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| getSelectedOrg() | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| lineNumber (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | [protected] |
| name (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | [protected] |
| parameters (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | [protected] |
| print(Graphics g, PageFormat pf, int pi) | gov::lbl::genome::gui::panel::VGBPanel | [inline] |
| rereadInitInfo(HashMap g) | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| resetBaseGenome(String genome) | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| resetDefaultBaseGenome() | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| resetOrgList() | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| retrieveInitInfo() | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| retrieveInitInfoDone (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | |
| selectedGenome (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | [package] |
| setBaseGenome(final CurveInfo curve, Vector vcontigs) | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| setBaseGenome(Status status) | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| setBaseGenome(String genome) | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| setContig(String c) | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| setDefaultBaseGenome() | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| setGenomes(HashMap genomes) (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| setOrgLabel(int org) | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| setOrgList(Vector curves, Vector displayed) | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline] |
| uiInit(String initStartX, String initEndX) (defined in gov::lbl::genome::gui::panel::BaseInfoPanel) | gov::lbl::genome::gui::panel::BaseInfoPanel | [inline, package] |
| va (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | |
| VGBPanel(VistaApp vapp) (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | [inline] |
| VGBPanel(VistaApp vapp, int line) | gov::lbl::genome::gui::panel::VGBPanel | [inline] |
