gov::lbl::genome::common::features::Repeat Class Reference

Inheritance diagram for gov::lbl::genome::common::features::Repeat:

[legend]Collaboration diagram for gov::lbl::genome::common::features::Repeat:

[legend]List of all members.

Public Member Functions
	Repeat (String inChromosome, long inStart, long inEnd, String inType)
String	getType ()
String	toString ()
String	toString (long offset)
Static Public Attributes
final String	NAME = "repeat"
final String	LINE = "LINE"
final String	LTR = "LTR"
final String	SINE = "SINE"
final String	RNA = "RNA"
final String	DNA = "DNA"
final String	OTHER = "Other"
final String[]	TYPES

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Detailed Description

Repeat represents a segment of a DNA sequence that is a repeated portion.

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Constructor & Destructor Documentation

gov::lbl::genome::common::features::Repeat::Repeat (  String  inChromosome, long  inStart, long  inEnd, String  inType )  [inline]

Repeat Parameters: inChromosome  String inStart  long inEnd  long inType  String

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Member Function Documentation

String gov::lbl::genome::common::features::Repeat::getType (   )  [inline]

get Type Returns: String

String gov::lbl::genome::common::features::Repeat::toString (  long  offset  )  [inline]

return XML formatted string Parameters: offset  long Returns: String Reimplemented from gov::lbl::genome::common::features::ChromSegment.

String gov::lbl::genome::common::features::Repeat::toString (   )  [inline]

return XML formatted string Returns: String Reimplemented from gov::lbl::genome::common::features::ChromSegment.

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Member Data Documentation

final String [] gov::lbl::genome::common::features::Repeat::TYPES [static]

Initial value: { LINE, LTR, SINE, RNA, DNA, OTHER}

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The documentation for this class was generated from the following file:

• /home/teplitski/Projects/vgb2/src/gov/lbl/genome/common/features/Repeat.java

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