gov::lbl::genome::common::VistaCurveModel Class Reference

Inheritance diagram for gov::lbl::genome::common::VistaCurveModel:

[legend]Collaboration diagram for gov::lbl::genome::common::VistaCurveModel:

[legend]List of all members.

Public Member Functions
	VistaCurveModel (String id, int calcWindow, int minConsWidth, int consIdentity, int minx, int maxx)
	VistaCurveModel (TreeMap data, String id, int calcWindow, int minConsWidth, int consIdentity, int minx, int maxx)
	VistaCurveModel (TreeMap data, String id, int calcWindow, int minConsWidth, int consIdentity, Vector annotations, int minx, int maxx)
String	getRunOrg ()
int	getOrgId ()
int	getMinConsWidth ()
int	getMinY ()
void	setMinY (int y)
String	getMode ()
int	getCalcWindow ()
int	getConsIdentity ()
String	getParameterString (VistaApp vapp)
boolean	refresh (VistaApp vapp, long minx, long maxx)
Protected Attributes
int	minConsWidth = -1
int	calcWindow = -1
int	consIdentity = -1

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Detailed Description

Title: VistaCurveModel

Description: Vista data model

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

Author:

Lila Tretikov

Version:

1.0

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Constructor & Destructor Documentation

gov::lbl::genome::common::VistaCurveModel::VistaCurveModel (  TreeMap  data, String  id, int  calcWindow, int  minConsWidth, int  consIdentity, int  minx, int  maxx )  [inline]

VistaCurveModel Parameters: data  TreeMap id  String calcWindow  int minConsWidth  int consIdentity  int minx  int maxx  int

gov::lbl::genome::common::VistaCurveModel::VistaCurveModel (  TreeMap  data, String  id, int  calcWindow, int  minConsWidth, int  consIdentity, Vector  annotations, int  minx, int  maxx )  [inline]

VistaCurveModel Parameters: data  TreeMap id  String calcWindow  int minConsWidth  int consIdentity  int annotations  Vector minx  int maxx  int

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Member Function Documentation

int gov::lbl::genome::common::VistaCurveModel::getCalcWindow (   )  [inline]

get Calc Window Returns: int

int gov::lbl::genome::common::VistaCurveModel::getConsIdentity (   )  [inline]

get Cons Identity Returns: int

int gov::lbl::genome::common::VistaCurveModel::getMinConsWidth (   )  [inline]

get Min Cons Width Returns: int

int gov::lbl::genome::common::VistaCurveModel::getMinY (   )  [inline]

get Min Y Returns: int

String gov::lbl::genome::common::VistaCurveModel::getMode (   )  [inline]

get Mode Returns: String

int gov::lbl::genome::common::VistaCurveModel::getOrgId (   )  [inline]

get Organism Id Returns: int

String gov::lbl::genome::common::VistaCurveModel::getParameterString (  VistaApp  vapp  )  [inline]

this set of parameters will be passed to the server: &calcWindow=???&minConsWidth=???&minConsIdentity=???&numDataPoints=???&genes=??? Parameters: vapp  VistaApp Returns: String Reimplemented from gov::lbl::genome::common::AbstractCurveModel.

String gov::lbl::genome::common::VistaCurveModel::getRunOrg (   )  [inline]

get Run_ID and Org_ID in the form ready to pass to the server: <run>_<org> Returns: String

boolean gov::lbl::genome::common::VistaCurveModel::refresh (  VistaApp  vapp, long  minx, long  maxx )  [inline]

request data from the server Parameters: vapp  VistaApp minx  long maxx  long Returns: boolean Implements gov::lbl::genome::common::CurveModel.

void gov::lbl::genome::common::VistaCurveModel::setMinY (  int  y  )  [inline]

set Min Y Parameters: y  int

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The documentation for this class was generated from the following file:

• /home/teplitski/Projects/vgb2/src/gov/lbl/genome/common/VistaCurveModel.java

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