gov::lbl::genome::gui::panel::RepeatPanel Class Reference

Inheritance diagram for gov::lbl::genome::gui::panel::RepeatPanel:

[legend]Collaboration diagram for gov::lbl::genome::gui::panel::RepeatPanel:

[legend]List of all members.

Public Member Functions
	RepeatPanel (VistaApp vapp)
	RepeatPanel (VistaApp vapp, PageFormat pf)
synchronized void	setAnnotations (Vector annotations)
synchronized Vector	getAnnotations ()
void	requestAnnotations (final String chromosome, final long start, final long end)
BufferedImage	getImage ()
BufferedImage	getImage (int i)
Color	getAnnotationColor (int xCoor)
void	drawContent (Graphics g)
void	drawContent (Graphics g, PageFormat pf, int line)
RepeatPanelPicture	getPicture ()
Graphics2D	createImage ()
Object	clone ()
void	resetPicture ()
Public Attributes
int	REPEAT_OFFSET = 0
int	REPEAT_HEIGHT = 5
Package Attributes
Vector	annotations
Repeat[]	repeatLookup
String	src = "repeats"
CommUnit	cu = null

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Detailed Description

Title: RepeatPanel

Description: Draw repeats

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

Author:

Lila Tretikov, Mike Teplitskiy

Version:

1.0

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Constructor & Destructor Documentation

gov::lbl::genome::gui::panel::RepeatPanel::RepeatPanel (  VistaApp  vapp, PageFormat  pf )  [inline]

RepeatPanel Parameters: vapp  VistaApp pf  PageFormat

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Member Function Documentation

Object gov::lbl::genome::gui::panel::RepeatPanel::clone (   )  [inline]

clone Returns: Object

Graphics2D gov::lbl::genome::gui::panel::RepeatPanel::createImage (   )  [inline]

createImage Returns: Graphics2D Reimplemented from gov::lbl::genome::gui::panel::VistaPanel.

void gov::lbl::genome::gui::panel::RepeatPanel::drawContent (  Graphics  g, PageFormat  pf, int  line )  [inline]

drawContent Parameters: g  Graphics pf  PageFormat line  int

void gov::lbl::genome::gui::panel::RepeatPanel::drawContent (  Graphics  g  )  [inline]

drawContent Parameters: g  Graphics

Color gov::lbl::genome::gui::panel::RepeatPanel::getAnnotationColor (  int  xCoor  )  [inline]

return Annotation Color Parameters: xCoor  int Returns: Color

synchronized Vector gov::lbl::genome::gui::panel::RepeatPanel::getAnnotations (   )  [inline]

return annotations Returns: Vector

BufferedImage gov::lbl::genome::gui::panel::RepeatPanel::getImage (  int  i  )  [inline]

return Image Parameters: i  int Returns: BufferedImage

BufferedImage gov::lbl::genome::gui::panel::RepeatPanel::getImage (   )  [inline]

return Image Returns: BufferedImage

RepeatPanelPicture gov::lbl::genome::gui::panel::RepeatPanel::getPicture (   )  [inline]

getPicture Returns: RepeatPanelPicture

void gov::lbl::genome::gui::panel::RepeatPanel::requestAnnotations (  final String  chromosome, final long  start, final long  end )  [inline]

request Annotations from server Parameters: chromosome  String start  long end  long See also: gov.lbl.genome.common.CommUnit::getAnno(String, String, String, String, String)

void gov::lbl::genome::gui::panel::RepeatPanel::resetPicture (   )  [inline]

reset picture size and margins

synchronized void gov::lbl::genome::gui::panel::RepeatPanel::setAnnotations (  Vector  annotations  )  [inline]

set annotations Parameters: annotations  Vector

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The documentation for this class was generated from the following file:

• /home/teplitski/Projects/vgb2/src/gov/lbl/genome/gui/panel/RepeatPanel.java

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