| activeTracerPanel (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | |
| addCurves(Status status) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| addDefaultCurve(GenomeInfo genome) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| addGraph(GeneralGraphView graph) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| addPrintedGraph(int pos) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| annotationLegend(Graphics g, Color color, int x, int y, String name) | gov::lbl::genome::gui::panel::DisplayPanel | [inline, protected] |
| arrowsPanel (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | [package] |
| axisPanel (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | [protected] |
| bottom (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| bottomSpace (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| canAdd (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | [package] |
| commonParameters (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | [protected] |
| componentHidden(ComponentEvent e) (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| componentMoved(ComponentEvent e) (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| componentResized(ComponentEvent e) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| componentShown(ComponentEvent e) (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| contigLegend(Graphics g, Color color, int x, int y, String name) | gov::lbl::genome::gui::panel::DisplayPanel | [inline, protected] |
| convertX(long x) | gov::lbl::genome::gui::panel::VistaPanel | [inline, protected] |
| convertX(double x) | gov::lbl::genome::gui::panel::VistaPanel | [inline, protected] |
| createImage() | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| currentPage (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | |
| curveNum (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | [package] |
| curvesPerPage (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | |
| debug (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | [static] |
| Debug(String s) | gov::lbl::genome::gui::panel::VGBPanel | [inline, protected] |
| df (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| dispatch(MouseEvent e) | gov::lbl::genome::gui::panel::VGBPanel | [inline] |
| dispatchEvent(MouseEvent e) | gov::lbl::genome::gui::panel::VGBPanel | [inline] |
| DisplayPanel(VistaApp vapp) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| dragged (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | |
| drawbar (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | |
| drawContent(Graphics g, int width, int height) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| drawContent(Graphics g, PageFormat pf) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| endTracerPanel (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | |
| findParentFrame() | gov::lbl::genome::gui::panel::VGBPanel | [inline] |
| g2d (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| getAllCurveInfos() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getAllCurves() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getAllGraphs() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getAllSelectedGraphs() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getAnnotationPanel() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getChromDX() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getFirstSelectedIndex() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getFormattedNumberString(double x, int maxFracDigits) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| getFormattedNumberString(int x, int maxFracDigits) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| getFormattedXDisplayString(int currXPos) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| getFormattedXDisplayString(int currXPos, int line) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| getGraph(int pos) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getGraphPanelSize() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getHorizSize() | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| getLastSelectedIndex() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getNumberOfGraphs() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getPanelCapacity() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getPopup() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getPrintHeight(int graphs, int lines) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getRepeatPanel() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getSelectedIndices() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getStatistics() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getStringWidth(String s, Font f) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| getTracerPanel() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getUniqOrganisms() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getVertSize() | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| getVisibleCurveNames() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| getXDisplay(int currXPos) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| getXDisplay(int currXPos, int line) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| height (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| hideGraph(String curveName) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| horizSize (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| image (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| inTracerPanel (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | |
| leftSpace (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| lineNumber (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | [protected] |
| maxX (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| minX (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| moveSelectedDown() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| moveSelectedUp() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| multiSelectGraphs() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| name (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | [protected] |
| offsetWidth (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| pages (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | |
| paintComponent(Graphics g) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| parameters (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | [protected] |
| pixelWidth (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| prevPage (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | |
| print(Graphics g, PageFormat pf, int pi) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| rebuildPanel() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| refreshAnnotations() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| refreshAnnotations(Status status) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| refreshGraphs() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| refreshThread (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | [protected] |
| removeAllGraphs() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| removeAllSelectedGraphs() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| removeDataImages() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| removeGraph(int pos) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| removeGraph(String name) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| removeImage() | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| repaintTracerPanels() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| repeatLegend(Graphics g, Color color, int x, int y, String name) | gov::lbl::genome::gui::panel::DisplayPanel | [inline, protected] |
| replaceGraph(GeneralGraphView graph, int i) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| resetPrintedGraphs() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| resetXBorders() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| rightSpace (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| selectGraph(int index) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| setArrows() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| setDetails() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| setFixedRows(int rows) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| setImage(BufferedImage im) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| setPrintCapacity(int graphs, int lines) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| setSelectedIndices(int[] indices) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| setSettings() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| setTracerPanel(TracerPanel tp) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| setXBorders(int x) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| shortenString(String s, Font f, int width) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| showGraph(String curveName) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| startTracerPanel (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | |
| swapGraphs(int graph1, int graph2) | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| top (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| topSpace (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| tracerPanels (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | [package] |
| unselectAllGraphs() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| updatePosition() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| updateSelectList() | gov::lbl::genome::gui::panel::DisplayPanel | [inline] |
| va (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | |
| vertSize (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| VGBPanel(VistaApp vapp) (defined in gov::lbl::genome::gui::panel::VGBPanel) | gov::lbl::genome::gui::panel::VGBPanel | [inline] |
| VGBPanel(VistaApp vapp, int line) | gov::lbl::genome::gui::panel::VGBPanel | [inline] |
| VistaPanel(VistaApp vapp) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| VistaPanel(VistaApp vapp, int line) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| VistaPanel(VistaApp vapp, PageFormat pf, int line) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| VistaPanel(VistaApp vapp, PageFormat pf) | gov::lbl::genome::gui::panel::VistaPanel | [inline] |
| wait_cursor (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| waitCursor (defined in gov::lbl::genome::gui::panel::VistaPanel) | gov::lbl::genome::gui::panel::VistaPanel | [protected] |
| xend (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | |
| xstart (defined in gov::lbl::genome::gui::panel::DisplayPanel) | gov::lbl::genome::gui::panel::DisplayPanel | |
