Tools for Comparative Genomics

Whole Genome Comparative Analysis of the Arabidopsis thaliana (TAIR10) Genome

From this page you can access the results of:

the multiple alignments

• Arabidopsis thaliana (TAIR10), Arabidopsis lyrata v.1.0, Carica papaya, Citrus clementina v.0.9 and Thellungiella halophila v.1.0 genomes.

• Arabidopsis thaliana (TAIR10), Poplar v.2.0, Medicago truncatula release Mt3.0, Wine grape, Carica papaya and Ricinus communis release 0.1 genomes.

the pairwise alignments of the

Arabidopsis thaliana (TAIR10) genome produced by The Arabidopsis Information Resource (TAIR) with the following genomes:

• The Oryza sativa v.5.0 genome produced by The Institute for Genomic Research (TIGR)

• The Rice v.7.0 genome produced by the MSU Rice Genome Annotation Project

• The Rice v.6.0 genome produced by the MSU Rice Genome Annotation Project

• The Maize AGP v.3.0 genome produced by the Maize Genome Sequencing Project

• The Maize B73 v.2 genome produced by the Maize Genome Sequencing Project

• The Maize v.4a.53 genome produced by the Maize Genome Sequencing Project

• The Arabidopsis thaliana (TAIR10) (dupl.) genome produced by The Arabidopsis Information Resource (TAIR)

• The P. trichocarpa v.1.1 genome produced by the JGI

• The Poplar v.3.0 genome produced by the JGI

• The Poplar v.2.0 genome produced by the JGI

• The M. truncatula Mt4.0 genome produced by the NSF/EU Medicago truncatula genome sequencing project

• The Medicago truncatula release A17_3.5 genome produced by the NSF/EU Medicago truncatula genome sequencing project

• The Medicago truncatula release Mt3.0 genome produced by the NSF/EU Medicago truncatula genome sequencing project

• The Medicago truncatula release Mt2.0 genome produced by the NSF/EU Medicago truncatula genome sequencing project

• The Ostreococcus lucimarinus v.2.0 genome produced by the JGI

• The Chlamydomonas reinhardtii v.5.0 genome produced by the JGI

• The Chlamydomonas reinhardtii v.4.0 genome produced by the JGI

• The Volvox carteri v.2.0 genome produced by the JGI

• The Citrus sinensis v.1.0 genome produced by the JGI

• The Micromonas pusilla RCC299 v.3.0 genome produced by the JGI

• The Sorghum bicolor v.1.0 genome produced by the JGI

• The Sorghum bicolor v.2.0 genome produced by the JGI

• The Moss v.3.0 genome produced by the JGI

• The Moss v.1.1 genome produced by the JGI

• The Selaginella moellendorffii v.1.0 genome produced by the JGI

• The Coccomyxa sp. C-169 genome produced by the JGI

• The Soybean v.2.0 genome produced by the JGI

• The Glycine max genome produced by the JGI

• The Wine grape genome produced by the French-Italian Public Consortium for Grapevine Genome Characterization

• The Wine grape genome produced by the French-Italian Public Consortium for Grapevine Genome Characterization

• The Arabidopsis lyrata v.1.0 genome produced by the JGI

• The Carica papaya genome produced by the Hawaii Papaya Genome Project

• The Brachypodium distachyon v.1.0 genome produced by the JGI

• The Capsella rubella v.1.0 genome produced by the JGI

• The Manihot esculenta v.4 genome produced by The Cassava Genome Project

• The Manihot esculenta v.1.1 genome produced by The Cassava Genome Project

• The Ricinus communis release 0.1 genome produced by The Institute for Genomic Research (TIGR)

• The Cucumis sativus v.1 genome produced by the Cucumber genome project

• The Mimulus guttatus v.1.0 genome produced by the JGI

• The Mimulus guttatus v.2.0 genome produced by the JGI

• The Setaria italica v.2.0 genome produced by the JGI

• The Prunus persica v.1.0 genome produced by the International Peach Genome Initiative

• The Aquilegia coerulea v.1.0 genome produced by the JGI

• The Citrus clementina v.1.0 genome produced by the JGI

• The Micromonas pusilla CCMP1545 v3.0 (MicpuC3) genome produced by the JGI

• The Eucalyptus grandis v.1.0 genome produced by the JGI

• The Phaseolus vulgaris v.1.0 genome produced by the JGI

• The Linum usitatissimum v.1.0 genome produced by the Beijing Genomics Institute

• The Malus domestica v.1.0 genome produced by the Genome Database for Rosaceae

• The Brassica rapa v.1.1 genome produced by the Brassica database (BRAD)

• The Fragaria vesca v.1.1 genome produced by the Genome Database for Rosaceae

• The Gossypium raimondii v.2.0 genome produced by the JGI

• The Theobroma cacao v.1.1 genome produced by the Cacao Genome Project

• The Switchgrass v.1.0 genome produced by the JGI

• The Panicum virgatum v.0.0 genome produced by the JGI

• The Potato DM v3/PGSC v2.1.10 genome produced by the Potato Genome Sequencing Consortium

• The Solanum lycopersicum v.2.3 genome produced by the International Tomato Genome Sequencing Project

• The A. halleri v.1.0 genome produced by the JGI

• The C. grandiflora v.1.0 genome produced by the JGI

• The Drummond's rockcress v.1.0 genome produced by the JGI

• The Turnip mustard v.1.0 genome produced by the JGI

• The Hall's panicgrass v.0.5 genome produced by the JGI

Annotation for this genome comes from the The Arabidopsis Information Resource (TAIR).

Methods and references