Tools for Comparative Genomics

Whole Genome Comparative Analysis of the Manihot esculenta v.4 Genome

From this page you can access the results of alignments of the Manihot esculenta v.4 genome produced by The Cassava Genome Project with the following genomes:

• The Rice v.7.0 genome produced by the MSU Rice Genome Annotation Project

• The Rice v.6.0 genome produced by the MSU Rice Genome Annotation Project

• The Arabidopsis thaliana (TAIR10) genome produced by The Arabidopsis Information Resource (TAIR)

• The Poplar v.2.0 genome produced by the JGI

• The Poplar v.3.0 genome produced by the JGI

• The Medicago truncatula release Mt3.0 genome produced by the NSF/EU Medicago truncatula genome sequencing project

• The M. truncatula Mt4.0 genome produced by the NSF/EU Medicago truncatula genome sequencing project

• The Medicago truncatula release A17_3.5 genome produced by the NSF/EU Medicago truncatula genome sequencing project

• The Citrus sinensis v.1.0 genome produced by the JGI

• The Soybean v.2.0 genome produced by the JGI

• The Glycine max genome produced by the JGI

• The Wine grape genome produced by the French-Italian Public Consortium for Grapevine Genome Characterization

• The Arabidopsis lyrata v.1.0 genome produced by the JGI

• The Carica papaya genome produced by the Hawaii Papaya Genome Project

• The Ricinus communis release 0.1 genome produced by The Institute for Genomic Research (TIGR)

• The Cucumis sativus v.1 genome produced by the Cucumber genome project

• The Mimulus guttatus v.1.0 genome produced by the JGI

• The Mimulus guttatus v.2.0 genome produced by the JGI

• The Prunus persica v.1.0 genome produced by the International Peach Genome Initiative

• The Aquilegia coerulea v.1.0 genome produced by the JGI

• The Citrus clementina v.0.9 genome produced by the JGI

• The Eucalyptus grandis v.1.0 genome produced by the JGI

• The Phaseolus vulgaris v.1.0 genome produced by the JGI

• The Linum usitatissimum v.1.0 genome produced by the Beijing Genomics Institute

• The Malus domestica v.1.0 genome produced by the Genome Database for Rosaceae

• The Fragaria vesca v.1.1 genome produced by the Genome Database for Rosaceae

Annotation for this genome comes from the JGI.

Methods and references