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gov::lbl::genome::common::features::Gene Member List

This is the complete list of members for gov::lbl::genome::common::features::Gene, including all inherited members.

add(ChromSegment segment)gov::lbl::genome::common::features::ChromSegment [inline]
chromosome (defined in gov::lbl::genome::common::features::ChromSegment)gov::lbl::genome::common::features::ChromSegment [package]
ChromSegment(String inChromosome, long inStart, long inEnd, int rEnd)gov::lbl::genome::common::features::ChromSegment [inline]
ChromSegment(String inChromosome, long inStart, long inEnd)gov::lbl::genome::common::features::ChromSegment [inline]
ChromSegment(String inChrom, String inStart, String inEnd)gov::lbl::genome::common::features::ChromSegment [inline]
ChromSegment(String inChrom, String neg, String inStart, String inEnd)gov::lbl::genome::common::features::ChromSegment [inline]
ChromSegment(String inName, String inChromosome, long inStart, long inEnd)gov::lbl::genome::common::features::ChromSegment [inline]
cloneSegment()gov::lbl::genome::common::features::ChromSegment [inline]
compareTo(Object obj)gov::lbl::genome::common::features::ChromSegment [inline]
contains(ChromSegment segment)gov::lbl::genome::common::features::ChromSegment [inline]
contains(ChromPosition position)gov::lbl::genome::common::features::ChromSegment [inline]
contains(long coordinate)gov::lbl::genome::common::features::ChromSegment [inline]
end (defined in gov::lbl::genome::common::features::ChromSegment)gov::lbl::genome::common::features::ChromSegment [package]
Gene(String inChrom, long inStart, long inEnd) (defined in gov::lbl::genome::common::features::Gene)gov::lbl::genome::common::features::Gene [inline]
Gene(long inStart, long inEnd, String inName, String descr, boolean inForward)gov::lbl::genome::common::features::Gene [inline]
Gene(String inChromosome, long inStart, long inEnd, String inName, String descr, boolean inForward)gov::lbl::genome::common::features::Gene [inline]
getChromName()gov::lbl::genome::common::features::ChromSegment [inline]
getChromosome()gov::lbl::genome::common::features::ChromSegment [inline]
getChromosome(boolean alter)gov::lbl::genome::common::features::ChromSegment [inline]
getDescr()gov::lbl::genome::common::features::Gene [inline]
getEnd()gov::lbl::genome::common::features::ChromSegment [inline]
getGeneName()gov::lbl::genome::common::features::Gene [inline]
getName()gov::lbl::genome::common::features::ChromSegment [inline]
getPos()gov::lbl::genome::common::features::ChromSegment [inline]
getRealEnd()gov::lbl::genome::common::features::ChromSegment [inline]
getStart()gov::lbl::genome::common::features::ChromSegment [inline]
hashCode() (defined in gov::lbl::genome::common::features::ChromSegment)gov::lbl::genome::common::features::ChromSegment [inline]
intersect(ChromSegment segment)gov::lbl::genome::common::features::ChromSegment [inline]
isForward()gov::lbl::genome::common::features::Gene [inline]
isRealChrom()gov::lbl::genome::common::features::ChromSegment [inline]
parsePos(String pos)gov::lbl::genome::common::features::ChromSegment [inline, static]
parseSpan(String span)gov::lbl::genome::common::features::ChromSegment [inline, static]
positionFormat(String pos)gov::lbl::genome::common::features::ChromSegment [inline, static]
realChrom (defined in gov::lbl::genome::common::features::ChromSegment)gov::lbl::genome::common::features::ChromSegment [package]
realEnd (defined in gov::lbl::genome::common::features::ChromSegment)gov::lbl::genome::common::features::ChromSegment [package]
setChromosome(int chromosome)gov::lbl::genome::common::features::ChromSegment [inline]
setChromosome(String chromosome)gov::lbl::genome::common::features::ChromSegment [inline]
setEnd(long end)gov::lbl::genome::common::features::ChromSegment [inline]
setRealChrom(boolean realChrom)gov::lbl::genome::common::features::ChromSegment [inline]
setStart(long start)gov::lbl::genome::common::features::ChromSegment [inline]
start (defined in gov::lbl::genome::common::features::ChromSegment)gov::lbl::genome::common::features::ChromSegment [package]
toString()gov::lbl::genome::common::features::Gene [inline]
toString(long offset)gov::lbl::genome::common::features::Gene [inline]
touches(ChromSegment segment)gov::lbl::genome::common::features::ChromSegment [inline]


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