gov::lbl::genome::common::features::SuperContig Member List

This is the complete list of members for gov::lbl::genome::common::features::SuperContig, including all inherited members.

add(ChromSegment segment)	gov::lbl::genome::common::features::ChromSegment	[inline]
chromosome (defined in gov::lbl::genome::common::features::ChromSegment)	gov::lbl::genome::common::features::ChromSegment	[package]
ChromSegment(String inChromosome, long inStart, long inEnd, int rEnd)	gov::lbl::genome::common::features::ChromSegment	[inline]
ChromSegment(String inChromosome, long inStart, long inEnd)	gov::lbl::genome::common::features::ChromSegment	[inline]
ChromSegment(String inChrom, String inStart, String inEnd)	gov::lbl::genome::common::features::ChromSegment	[inline]
ChromSegment(String inChrom, String neg, String inStart, String inEnd)	gov::lbl::genome::common::features::ChromSegment	[inline]
ChromSegment(String inName, String inChromosome, long inStart, long inEnd)	gov::lbl::genome::common::features::ChromSegment	[inline]
cloneSegment()	gov::lbl::genome::common::features::ChromSegment	[inline]
compareTo(Object obj)	gov::lbl::genome::common::features::ChromSegment	[inline]
contains(ChromSegment segment)	gov::lbl::genome::common::features::ChromSegment	[inline]
contains(ChromPosition position)	gov::lbl::genome::common::features::ChromSegment	[inline]
contains(long coordinate)	gov::lbl::genome::common::features::ChromSegment	[inline]
end (defined in gov::lbl::genome::common::features::ChromSegment)	gov::lbl::genome::common::features::ChromSegment	[package]
getChromName()	gov::lbl::genome::common::features::ChromSegment	[inline]
getChromosome()	gov::lbl::genome::common::features::ChromSegment	[inline]
getChromosome(boolean alter)	gov::lbl::genome::common::features::ChromSegment	[inline]
getEnd()	gov::lbl::genome::common::features::ChromSegment	[inline]
getName()	gov::lbl::genome::common::features::ChromSegment	[inline]
getPos()	gov::lbl::genome::common::features::ChromSegment	[inline]
getRealEnd()	gov::lbl::genome::common::features::ChromSegment	[inline]
getStart()	gov::lbl::genome::common::features::ChromSegment	[inline]
getSuperContigNum()	gov::lbl::genome::common::features::SuperContig	[inline]
hashCode() (defined in gov::lbl::genome::common::features::ChromSegment)	gov::lbl::genome::common::features::ChromSegment	[inline]
intersect(ChromSegment segment)	gov::lbl::genome::common::features::ChromSegment	[inline]
isRealChrom()	gov::lbl::genome::common::features::ChromSegment	[inline]
parsePos(String pos)	gov::lbl::genome::common::features::ChromSegment	[inline, static]
parseSpan(String span)	gov::lbl::genome::common::features::ChromSegment	[inline, static]
positionFormat(String pos)	gov::lbl::genome::common::features::ChromSegment	[inline, static]
realChrom (defined in gov::lbl::genome::common::features::ChromSegment)	gov::lbl::genome::common::features::ChromSegment	[package]
realEnd (defined in gov::lbl::genome::common::features::ChromSegment)	gov::lbl::genome::common::features::ChromSegment	[package]
setChromosome(int chromosome)	gov::lbl::genome::common::features::ChromSegment	[inline]
setChromosome(String chromosome)	gov::lbl::genome::common::features::ChromSegment	[inline]
setEnd(long end)	gov::lbl::genome::common::features::ChromSegment	[inline]
setRealChrom(boolean realChrom)	gov::lbl::genome::common::features::ChromSegment	[inline]
setStart(long start)	gov::lbl::genome::common::features::ChromSegment	[inline]
start (defined in gov::lbl::genome::common::features::ChromSegment)	gov::lbl::genome::common::features::ChromSegment	[package]
SuperContig(int inSuperContigNum, String inChromosome, long inStart, long inEnd)	gov::lbl::genome::common::features::SuperContig	[inline]
toString()	gov::lbl::genome::common::features::SuperContig	[inline]
toString(long offset)	gov::lbl::genome::common::features::SuperContig	[inline]
touches(ChromSegment segment)	gov::lbl::genome::common::features::ChromSegment	[inline]

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