gov.lbl.genome.common
Class ViewSettings

java.lang.Object
  gov.lbl.genome.common.ViewSettings

public class ViewSettings
extends java.lang.Object

Constructor Summary

ViewSettings(java.lang.Integer inRun, int dset, int base, java.lang.String inRunName, ChromSegment chromSeg, int inMinConsWidth, int inCalcWindow, double inConsIdentity, int inMaxCons, int inMinCons, int inRowCount, boolean inShowGenes, boolean inShowContigs, boolean inShowRepeats, boolean inCnsUnderCurve, int inInterval, int numDataPoints)

Method Summary

boolean	equals(java.lang.Object obj)
int	getBase()
int	getCalcWindow()
java.lang.String	getChromosome()
ChromSegment	getChromSegment()
boolean	getCnsUnderCurve()
double	getConsIdentity()
int	getDset()
long	getEnd()
int	getInterval()
int	getMaxConservation()
int	getMinConservation()
int	getMinConsWidth()
int	getNumDataPoints()
int	getRowCount()
java.lang.Integer	getRun()
java.lang.String	getRunName()
boolean	getShowContigs()
boolean	getShowGenes()
boolean	getShowRepeats()
long	getStart()
void	setInterval(int newInterval)
void	setNumDataPoints(int numDataPoints)
void	setRowCount(int newRowCount)
void	setRun(java.lang.Integer inRun)
java.lang.String	toString()
java.lang.String	toURLString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ViewSettings

public ViewSettings(java.lang.Integer inRun,
                    int dset,
                    int base,
                    java.lang.String inRunName,
                    ChromSegment chromSeg,
                    int inMinConsWidth,
                    int inCalcWindow,
                    double inConsIdentity,
                    int inMaxCons,
                    int inMinCons,
                    int inRowCount,
                    boolean inShowGenes,
                    boolean inShowContigs,
                    boolean inShowRepeats,
                    boolean inCnsUnderCurve,
                    int inInterval,
                    int numDataPoints)

Method Detail

getRun

public java.lang.Integer getRun()

getDset

public int getDset()

getBase

public int getBase()

getRunName

public java.lang.String getRunName()

getChromosome

public java.lang.String getChromosome()

getStart

public long getStart()

getEnd

public long getEnd()

getChromSegment

public ChromSegment getChromSegment()

getMinConsWidth

public int getMinConsWidth()

getCalcWindow

public int getCalcWindow()

getConsIdentity

public double getConsIdentity()

getMaxConservation

public int getMaxConservation()

getMinConservation

public int getMinConservation()

getRowCount

public int getRowCount()

getInterval

public int getInterval()

getNumDataPoints

public int getNumDataPoints()

setRun

public void setRun(java.lang.Integer inRun)

setRowCount

public void setRowCount(int newRowCount)

setInterval

public void setInterval(int newInterval)

setNumDataPoints

public void setNumDataPoints(int numDataPoints)

getShowGenes

public boolean getShowGenes()

getShowContigs

public boolean getShowContigs()

getShowRepeats

public boolean getShowRepeats()

getCnsUnderCurve

public boolean getCnsUnderCurve()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

toURLString

public java.lang.String toURLString()

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class java.lang.Object