gov.lbl.genome.gui
Class Picture

java.lang.Object
  gov.lbl.genome.gui.Picture

Direct Known Subclasses:

AnnotationPanelPicture, AxisPanelPicture, ChromPanelPicture, ContigPanelPicture, RepeatPanelPicture

public class Picture
extends java.lang.Object

Title: Picture

Description: Some panel require intermediate class for drawing. This class provides basic methods for drawing pictures

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

Field Summary

protected javax.swing.JComponent	component
protected boolean	debug
protected java.text.DecimalFormat	df
protected java.awt.Graphics	g
protected java.awt.Graphics2D	g2d
protected boolean	G2D
protected int	height
protected java.awt.image.BufferedImage	image
protected int	imageableHeight
protected int	imageableWidth
protected int	marginBottom
protected int	marginLeft
protected int	marginRight
protected int	marginTop
protected int	maxHeight
protected int	maxWidth
protected long	maxX
protected long	minX
protected java.lang.String	name
protected double	pixelWidth
protected boolean	tooSmall
protected VistaApp	va
protected int	width
protected int	z

Constructor Summary

Picture(VistaApp vapp, java.lang.String name)
Picture

Method Summary

protected int	convertX(double x) convert cromosome coordinate to the picture coordinate
protected int	convertX(long x) convert cromosome coordinate to the picture coordinate
void	debug(java.lang.String s) pring debuging output
void	drawPicture(java.awt.Graphics gr) draw Picture
void	drawPicture(java.awt.Graphics gr, int width, int height) draw Picture
void	drawPicture(java.awt.Graphics gr, javax.swing.JComponent comp) draw Picture
void	drawPicture(java.awt.Graphics gr, javax.swing.JComponent comp, int i) draw Picture
void	drawPicture(java.awt.Graphics gr, java.awt.print.PageFormat pf) draw Picture
void	drawPicture(java.awt.Graphics gr, java.awt.print.PageFormat pf, int line) draw Picture
long	getDX() return maxX-minX
java.lang.String	getFormattedNumberString(double x, int maxFracDigits) return Formatted Number String
java.lang.String	getFormattedNumberString(int x, int maxFracDigits) return Formatted Number String
java.lang.String	getFormattedXDisplayString(int currXPos) return Formatted String converted to the chromosome coordinates
int	getHeight() return picture Height
java.awt.image.BufferedImage	getImage() return new Image with default size
java.awt.image.BufferedImage	getImage(int width, int height) return new Image with the size specified by parameters
java.awt.image.BufferedImage	getImage(javax.swing.JComponent comp) return new Image with the size equals to the componet size
java.awt.image.BufferedImage	getImage(javax.swing.JComponent comp, int i) return new Image with the size equals to the componet size
java.awt.image.BufferedImage	getImage(java.awt.print.PageFormat pf) return new Image with the size equals to the page size
int	getImageableHeight() return height of the Imageable rectangle
int	getImageableWidth() return width of the Imageable rectangle
int	getMarginBottom() return bottom Margin
int	getMarginLeft() return left Margin
int	getMarginRight() return right Margin
int	getMarginTop() return top Margin
int	getMaxHeight() return Max drawable Height
int	getMaxWidth() return tMax drawable Width
double	getRelX(double x) eturn relative position from the begining
double	getRelX(long x) return relative position from the begining
int	getStringWidth(java.lang.String s, java.awt.Font f) return Width (in pixels) of the string
int	getWidth() return picture Width
long	getXDisplay(int currXPos) convert the parameter into chromosome coordinates
void	setComponent(javax.swing.JComponent comp) set Component
void	setDebug(boolean d) set Debuging mode
void	setImageableArea(int left, int top, int width, int height) set Imageable Area from the parameters
void	setImageableArea(java.awt.print.PageFormat pf) setI mageable Area from the pages Imageable area
void	setMarginRight(int x) set right Margin
void	setMargins(int left, int top, int right, int bottom) set Margins from the parameters
void	setMargins(java.awt.print.PageFormat pf) set Margins from the page margins
void	setMaxX(int i) set Max X
void	setMaxX(long maxx) set Max X
void	setMinMaxX(int i) set Min and Max X
void	setMinMaxX(long minx, long maxx) set Min and Max X
void	setMinX(int i) set Min X
void	setMinX(long minx) set Min X
void	setPage(java.awt.print.PageFormat pf) set Page
void	setSize() set size from the default component
void	setSize(int width, int height) set Size from the parameters
void	setSize(javax.swing.JComponent comp) set size from the component
void	setSize(java.awt.print.PageFormat pf) set Size from the page
void	setZ(int Z) this parameter can be 0 or 1.
java.lang.String	shortenString(java.lang.String s, java.awt.Font f, int width) remove last characters from the string until its width is less or equal the maximum parameter
java.lang.String	toString() return summary string
void	translate(int x, int y) translate imageable area
void	translate(int x, int y, int x1, int y1) change size and position of the imageable area
int	X(int x) correct x coordinates
int	Y(int y) correct y coordinates

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

va

protected VistaApp va

width

protected int width

height

protected int height

imageableWidth

protected int imageableWidth

imageableHeight

protected int imageableHeight

marginLeft

protected int marginLeft

marginRight

protected int marginRight

marginTop

protected int marginTop

marginBottom

protected int marginBottom

maxWidth

protected int maxWidth

maxHeight

protected int maxHeight

pixelWidth

protected double pixelWidth

g

protected java.awt.Graphics g

g2d

protected java.awt.Graphics2D g2d

df

protected java.text.DecimalFormat df

name

protected java.lang.String name

debug

protected boolean debug

G2D

protected boolean G2D

component

protected javax.swing.JComponent component

image

protected java.awt.image.BufferedImage image

minX

protected long minX

maxX

protected long maxX

tooSmall

protected boolean tooSmall

z

protected int z

Constructor Detail

Picture

public Picture(VistaApp vapp,
               java.lang.String name)

Picture

Parameters:

vapp - VistaApp

name - String

Method Detail

getImage

public java.awt.image.BufferedImage getImage()

return new Image with default size

Returns:

BufferedImage

getImage

public java.awt.image.BufferedImage getImage(javax.swing.JComponent comp,
                                             int i)

return new Image with the size equals to the componet size

Returns:

BufferedImage

getImage

public java.awt.image.BufferedImage getImage(javax.swing.JComponent comp)

return new Image with the size equals to the componet size

Returns:

BufferedImage

getImage

public java.awt.image.BufferedImage getImage(java.awt.print.PageFormat pf)

return new Image with the size equals to the page size

Returns:

BufferedImage

getImage

public java.awt.image.BufferedImage getImage(int width,
                                             int height)

return new Image with the size specified by parameters

Returns:

BufferedImage

drawPicture

public void drawPicture(java.awt.Graphics gr,
                        javax.swing.JComponent comp,
                        int i)

draw Picture

Parameters:

gr - Graphics

comp - JComponent

i - int

drawPicture

public void drawPicture(java.awt.Graphics gr,
                        javax.swing.JComponent comp)

draw Picture

Parameters:

gr - Graphics

comp - JComponent

drawPicture

public void drawPicture(java.awt.Graphics gr,
                        java.awt.print.PageFormat pf)

draw Picture

Parameters:

gr - Graphics

pf - PageFormat

drawPicture

public void drawPicture(java.awt.Graphics gr,
                        java.awt.print.PageFormat pf,
                        int line)

draw Picture

Parameters:

gr - Graphics

pf - PageFormat

line - int

drawPicture

public void drawPicture(java.awt.Graphics gr,
                        int width,
                        int height)

draw Picture

Parameters:

gr - Graphics

width - int

height - int

drawPicture

public void drawPicture(java.awt.Graphics gr)

draw Picture

Parameters:

gr - Graphics

debug

public void debug(java.lang.String s)

pring debuging output

Parameters:

s - String

setDebug

public void setDebug(boolean d)

set Debuging mode

Parameters:

d - boolean

getWidth

public int getWidth()

return picture Width

Returns:

int

getHeight

public int getHeight()

return picture Height

Returns:

int

getMaxWidth

public int getMaxWidth()

return tMax drawable Width

Returns:

int

getMaxHeight

public int getMaxHeight()

return Max drawable Height

Returns:

int

getImageableWidth

public int getImageableWidth()

return width of the Imageable rectangle

Returns:

int

getImageableHeight

public int getImageableHeight()

return height of the Imageable rectangle

Returns:

int

getMarginLeft

public int getMarginLeft()

return left Margin

Returns:

int

getMarginRight

public int getMarginRight()

return right Margin

Returns:

int

getMarginTop

public int getMarginTop()

return top Margin

Returns:

int

getMarginBottom

public int getMarginBottom()

return bottom Margin

Returns:

int

setSize

public void setSize()

set size from the default component

setSize

public void setSize(javax.swing.JComponent comp)

set size from the component

Parameters:

comp - JComponent

setSize

public void setSize(java.awt.print.PageFormat pf)

set Size from the page

Parameters:

pf - PageFormat

setSize

public void setSize(int width,
                    int height)

set Size from the parameters

Parameters:

width - int

height - int

setMargins

public void setMargins(java.awt.print.PageFormat pf)

set Margins from the page margins

Parameters:

pf - PageFormat

setMargins

public void setMargins(int left,
                       int top,
                       int right,
                       int bottom)

set Margins from the parameters

Parameters:

left - int

top - int

right - int

bottom - int

setImageableArea

public void setImageableArea(java.awt.print.PageFormat pf)

setI mageable Area from the pages Imageable area

Parameters:

pf - PageFormat

setImageableArea

public void setImageableArea(int left,
                             int top,
                             int width,
                             int height)

set Imageable Area from the parameters

Parameters:

left - int

top - int

width - int

height - int

toString

public java.lang.String toString()

return summary string

Overrides:

toString in class java.lang.Object

Returns:

String

translate

public void translate(int x,
                      int y)

translate imageable area

Parameters:

x - int

y - int

translate

public void translate(int x,
                      int y,
                      int x1,
                      int y1)

change size and position of the imageable area

Parameters:

x - int

y - int

x1 - int

y1 - int

setMarginRight

public void setMarginRight(int x)

set right Margin

Parameters:

x - int

getStringWidth

public int getStringWidth(java.lang.String s,
                          java.awt.Font f)

return Width (in pixels) of the string

Parameters:

s - String

f - Font

Returns:

int

shortenString

public java.lang.String shortenString(java.lang.String s,
                                      java.awt.Font f,
                                      int width)

remove last characters from the string until its width is less or equal the maximum parameter

Parameters:

s - String

f - Font

width - int

Returns:

String

X

public int X(int x)

correct x coordinates

Parameters:

x - int

Returns:

int

Y

public int Y(int y)

correct y coordinates

Parameters:

y - int

Returns:

int

convertX

protected int convertX(double x)

convert cromosome coordinate to the picture coordinate

Parameters:

x - double

Returns:

int

convertX

protected int convertX(long x)

convert cromosome coordinate to the picture coordinate

Parameters:

x - long

Returns:

int

getFormattedNumberString

public java.lang.String getFormattedNumberString(double x,
                                                 int maxFracDigits)

return Formatted Number String

Parameters:

x - double

maxFracDigits - int

Returns:

String

getFormattedNumberString

public java.lang.String getFormattedNumberString(int x,
                                                 int maxFracDigits)

return Formatted Number String

Parameters:

x - int

maxFracDigits - int

Returns:

String

getFormattedXDisplayString

public java.lang.String getFormattedXDisplayString(int currXPos)

return Formatted String converted to the chromosome coordinates

Parameters:

currXPos - int

Returns:

String

getXDisplay

public long getXDisplay(int currXPos)

convert the parameter into chromosome coordinates

Parameters:

currXPos - int

Returns:

long

setMinX

public void setMinX(long minx)

set Min X

Parameters:

minx - long

setMaxX

public void setMaxX(long maxx)

set Max X

Parameters:

maxx - long

setMinMaxX

public void setMinMaxX(long minx,
                       long maxx)

set Min and Max X

Parameters:

minx - long

maxx - long

setMinX

public void setMinX(int i)

set Min X

Parameters:

i - int

See Also:

VistaApp.getMinX(int)

setMaxX

public void setMaxX(int i)

set Max X

Parameters:

i - int

See Also:

VistaApp.getMaxX(int)

setMinMaxX

public void setMinMaxX(int i)

set Min and Max X

Parameters:

i - int

See Also:

VistaApp.getMinX(int), VistaApp.getMaxX(int)

setComponent

public void setComponent(javax.swing.JComponent comp)

set Component

Parameters:

comp - JComponent

setPage

public void setPage(java.awt.print.PageFormat pf)

set Page

Parameters:

pf - PageFormat

getDX

public long getDX()

return maxX-minX

Returns:

long

getRelX

public double getRelX(long x)

return relative position from the begining

Parameters:

x - long

Returns:

double

getRelX

public double getRelX(double x)

eturn relative position from the begining

Parameters:

x - double

Returns:

double

setZ

public void setZ(int Z)

this parameter can be 0 or 1. Usualy it's 0, but because of the "off by one" bug in the PDF library, all "fill" operations require corrected coordinates.

Parameters:

Z - int