gov.lbl.genome.common
Class AbstractCurveModel

java.lang.Object
  gov.lbl.genome.common.AbstractCurveModel

All Implemented Interfaces:

CurveModel, java.lang.Cloneable

Direct Known Subclasses:

CustomCurveModel, PCurveModel, VistaCurveModel

public abstract class AbstractCurveModel
extends java.lang.Object
implements CurveModel, java.lang.Cloneable

Title: AbstractCurveModel

Description: abstract curve data description

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

Field Summary

protected java.util.Vector	annotations
protected CurveInfo	curveInfo
protected java.util.TreeMap	data
protected boolean	hidden
protected java.lang.String	id
protected int	maxX
protected int	minX
protected static int	X_TYPE
protected static int	Y_TYPE

Constructor Summary

AbstractCurveModel(java.util.TreeMap data)
AbstractCurveModel

Method Summary

void	addPoint(java.awt.geom.Point2D.Float point) add Point
AbstractCurveModel	cloneCurve() clone Curve
boolean	equals(java.lang.Object o) compare 2 corve models
java.util.Iterator	getAllPoints() Use this method to get all the points in this CurveModel.
java.util.Vector	getAnnotations() return Annotations
CurveInfo	getCurveInfo() get CurveInfo
java.util.TreeMap	getData() return Data points
java.awt.geom.Point2D	getEndPoint() get End Point
java.lang.String	getID() get ID
java.lang.Double	getInterval() return Interval between two points
java.lang.String	getLongName() get Long Name
int	getMaxX() get Max X
int	getMinX() get Min X
java.lang.String	getName() get Name
int	getNumberOfPoints() get Number Of Points
CurveParameters	getParameters() return Curve Parameters
java.lang.String	getParameterString(VistaApp vapp) return Parameter String
java.awt.geom.Point2D	getStartPoint() get Start Point
int	getXType() return Type of the X axis
int	getYType() return Type of the Y axis
void	hide() hidden = true
boolean	isDeleted() return true if curve is deleted
boolean	isHidden() return true if the curve is hidden
void	setAnnotations(java.util.Vector annotations) set Annotations
void	setCurveInfo(CurveInfo ci) set CurveInfo
void	setData(java.util.TreeMap data) set Data points
void	show() hidden = false

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface gov.lbl.genome.common.CurveModel

refresh

Field Detail

X_TYPE

protected static final int X_TYPE

See Also:

Constant Field Values

Y_TYPE

protected static final int Y_TYPE

See Also:

Constant Field Values

data

protected java.util.TreeMap data

annotations

protected java.util.Vector annotations

curveInfo

protected CurveInfo curveInfo

hidden

protected boolean hidden

minX

protected int minX

maxX

protected int maxX

id

protected java.lang.String id

Constructor Detail

AbstractCurveModel

public AbstractCurveModel(java.util.TreeMap data)

AbstractCurveModel

Parameters:

data - TreeMap

Method Detail

setData

public void setData(java.util.TreeMap data)

set Data points

Parameters:

data - TreeMap

getData

public java.util.TreeMap getData()

return Data points

Returns:

TreeMap

setAnnotations

public void setAnnotations(java.util.Vector annotations)

set Annotations

Parameters:

annotations - Vector

getAnnotations

public java.util.Vector getAnnotations()

return Annotations

Returns:

Vector

getStartPoint

public java.awt.geom.Point2D getStartPoint()

Description copied from interface: CurveModel

get Start Point

Specified by:

getStartPoint in interface CurveModel

Returns:

Point2D

getEndPoint

public java.awt.geom.Point2D getEndPoint()

Description copied from interface: CurveModel

get End Point

Specified by:

getEndPoint in interface CurveModel

Returns:

Point2D

getInterval

public java.lang.Double getInterval()

Description copied from interface: CurveModel

return Interval between two points

Specified by:

getInterval in interface CurveModel

Returns:

Double

getXType

public int getXType()

Description copied from interface: CurveModel

return Type of the X axis

Specified by:

getXType in interface CurveModel

Returns:

int

getYType

public int getYType()

Description copied from interface: CurveModel

return Type of the Y axis

Specified by:

getYType in interface CurveModel

Returns:

int

addPoint

public void addPoint(java.awt.geom.Point2D.Float point)
              throws BadCoordinateTypeException

Description copied from interface: CurveModel

add Point

Specified by:

addPoint in interface CurveModel

Parameters:

point - Float

Throws:

BadCoordinateTypeException

getAllPoints

public java.util.Iterator getAllPoints()

Description copied from interface: CurveModel

Use this method to get all the points in this CurveModel.

Specified by:

getAllPoints in interface CurveModel

Returns:

Iterator over collection of all Point2D objects in this CurveModel.

getNumberOfPoints

public int getNumberOfPoints()

Description copied from interface: CurveModel

get Number Of Points

Specified by:

getNumberOfPoints in interface CurveModel

Returns:

int

setCurveInfo

public void setCurveInfo(CurveInfo ci)

set CurveInfo

Parameters:

ci - CurveInfo

getCurveInfo

public CurveInfo getCurveInfo()

get CurveInfo

Returns:

CurveInfo

isDeleted

public boolean isDeleted()

return true if curve is deleted

Returns:

boolean

See Also:

CurveInfo.isDeleted()()

getLongName

public java.lang.String getLongName()

get Long Name

Specified by:

getLongName in interface CurveModel

Returns:

String

See Also:

CurveInfo.getLongName()

getName

public java.lang.String getName()

get Name

Specified by:

getName in interface CurveModel

Returns:

String

See Also:

CurveInfo.getName()

hide

public void hide()

hidden = true

show

public void show()

hidden = false

isHidden

public boolean isHidden()

return true if the curve is hidden

Returns:

boolean

equals

public boolean equals(java.lang.Object o)

compare 2 corve models

Overrides:

equals in class java.lang.Object

Parameters:

o - Object

Returns:

boolean

getParameterString

public java.lang.String getParameterString(VistaApp vapp)

return Parameter String

Specified by:

getParameterString in interface CurveModel

Parameters:

vapp - VistaApp

Returns:

String

getParameters

public CurveParameters getParameters()

return Curve Parameters

Returns:

CurveParameters

getMinX

public int getMinX()

get Min X

Returns:

int

getMaxX

public int getMaxX()

get Max X

Returns:

int

cloneCurve

public AbstractCurveModel cloneCurve()
                              throws java.lang.CloneNotSupportedException

clone Curve

Returns:

AbstractCurveModel

Throws:

java.lang.CloneNotSupportedException

getID

public java.lang.String getID()

get ID

Returns:

String