gov.lbl.genome.common
Class VistaCurveModel

java.lang.Object
  gov.lbl.genome.common.AbstractCurveModel
      gov.lbl.genome.common.VistaCurveModel

All Implemented Interfaces:

CurveModel, java.lang.Cloneable

public class VistaCurveModel
extends AbstractCurveModel
implements java.lang.Cloneable

Title: VistaCurveModel

Description: Vista data model

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

Field Summary

protected int	calcWindow
protected int	consIdentity
protected int	minConsWidth

Fields inherited from class gov.lbl.genome.common.AbstractCurveModel

annotations, curveInfo, data, hidden, id, maxX, minX, X_TYPE, Y_TYPE

Constructor Summary

VistaCurveModel(java.lang.String id, int calcWindow, int minConsWidth, int consIdentity, int minx, int maxx)

VistaCurveModel(java.util.TreeMap data, java.lang.String id, int calcWindow, int minConsWidth, int consIdentity, int minx, int maxx)
VistaCurveModel

VistaCurveModel(java.util.TreeMap data, java.lang.String id, int calcWindow, int minConsWidth, int consIdentity, java.util.Vector annotations, int minx, int maxx)
VistaCurveModel

Method Summary

int	getCalcWindow() get Calc Window
int	getConsIdentity() get Cons Identity
int	getMinConsWidth() get Min Cons Width
int	getMinY() get Min Y
java.lang.String	getMode() get Mode
int	getOrgId() get Organism Id
java.lang.String	getParameterString(VistaApp vapp) this set of parameters will be passed to the server: &calcWindow=???&minConsWidth=???&minConsIdentity=???&numDataPoints=???&genes=???
java.lang.String	getRunOrg() get Run_ID and Org_ID in the form ready to pass to the server: _
boolean	refresh(VistaApp vapp, long minx, long maxx) request data from the server
void	setMinY(int y) set Min Y

Methods inherited from class gov.lbl.genome.common.AbstractCurveModel

addPoint, cloneCurve, equals, getAllPoints, getAnnotations, getCurveInfo, getData, getEndPoint, getID, getInterval, getLongName, getMaxX, getMinX, getName, getNumberOfPoints, getParameters, getStartPoint, getXType, getYType, hide, isDeleted, isHidden, setAnnotations, setCurveInfo, setData, show

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

minConsWidth

protected int minConsWidth

calcWindow

protected int calcWindow

consIdentity

protected int consIdentity

Constructor Detail

VistaCurveModel

public VistaCurveModel(java.lang.String id,
                       int calcWindow,
                       int minConsWidth,
                       int consIdentity,
                       int minx,
                       int maxx)

VistaCurveModel

public VistaCurveModel(java.util.TreeMap data,
                       java.lang.String id,
                       int calcWindow,
                       int minConsWidth,
                       int consIdentity,
                       int minx,
                       int maxx)

VistaCurveModel

Parameters:

data - TreeMap

id - String

calcWindow - int

minConsWidth - int

consIdentity - int

minx - int

maxx - int

VistaCurveModel

public VistaCurveModel(java.util.TreeMap data,
                       java.lang.String id,
                       int calcWindow,
                       int minConsWidth,
                       int consIdentity,
                       java.util.Vector annotations,
                       int minx,
                       int maxx)

VistaCurveModel

Parameters:

data - TreeMap

id - String

calcWindow - int

minConsWidth - int

consIdentity - int

annotations - Vector

minx - int

maxx - int

Method Detail

getRunOrg

public java.lang.String getRunOrg()

get Run_ID and Org_ID in the form ready to pass to the server: _

Returns:

String

getOrgId

public int getOrgId()

get Organism Id

Returns:

int

getMinConsWidth

public int getMinConsWidth()

get Min Cons Width

Returns:

int

getMinY

public int getMinY()

get Min Y

Returns:

int

setMinY

public void setMinY(int y)

set Min Y

Parameters:

y - int

getMode

public java.lang.String getMode()

get Mode

Returns:

String

getCalcWindow

public int getCalcWindow()

get Calc Window

Returns:

int

getConsIdentity

public int getConsIdentity()

get Cons Identity

Returns:

int

getParameterString

public java.lang.String getParameterString(VistaApp vapp)

this set of parameters will be passed to the server: &calcWindow=???&minConsWidth=???&minConsIdentity=???&numDataPoints=???&genes=???

Specified by:

getParameterString in interface CurveModel

Overrides:

getParameterString in class AbstractCurveModel

Parameters:

vapp - VistaApp

Returns:

String

refresh

public boolean refresh(VistaApp vapp,
                       long minx,
                       long maxx)

request data from the server

Specified by:

refresh in interface CurveModel

Parameters:

vapp - VistaApp

minx - long

maxx - long

Returns:

boolean