gov.lbl.genome.common.features
Class ChromPosition

java.lang.Object
  gov.lbl.genome.common.features.ChromPosition

Direct Known Subclasses:

Gap

public class ChromPosition
extends java.lang.Object

ChromPosition represents a position in a DNA sequence.

Constructor Summary

ChromPosition(java.lang.String inChromosome, long inCoordinate)
ChromPosition

ChromPosition(java.lang.String inSequence, java.lang.String inChromosome, long inCoordinate)
ChromPosition

Method Summary

static java.lang.Object	fromString(java.lang.String string) Restore a ChromPosition object from a one-line string.
java.lang.String	getChromosome() get Chromosome
long	getCoordinate() get Coordinate
java.lang.String	getSequence() get Sequence
int	hashCode()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

ChromPosition

public ChromPosition(java.lang.String inChromosome,
                     long inCoordinate)

ChromPosition

Parameters:

inChromosome - String

inCoordinate - long

ChromPosition

public ChromPosition(java.lang.String inSequence,
                     java.lang.String inChromosome,
                     long inCoordinate)

ChromPosition

Parameters:

inSequence - String

inChromosome - String

inCoordinate - long

Method Detail

getSequence

public java.lang.String getSequence()

get Sequence

Returns:

String

getChromosome

public java.lang.String getChromosome()

get Chromosome

Returns:

String

getCoordinate

public long getCoordinate()

get Coordinate

Returns:

long

fromString

public static java.lang.Object fromString(java.lang.String string)

Restore a ChromPosition object from a one-line string. This is a convenience method for use in serializing ChromPosition objects through a web page.

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object