gov.lbl.genome.gui
Class AbstractCurveView

java.lang.Object
  gov.lbl.genome.gui.AbstractCurveView

All Implemented Interfaces:

CurveView, java.lang.Cloneable

Direct Known Subclasses:

PValueCurveView, VistaCurveView

public abstract class AbstractCurveView
extends java.lang.Object
implements CurveView, java.lang.Cloneable

Title: AbstractCurveView

Description: This abstract class privides general curve drawing operations.
all real curves and images must be produced from this class

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

Field Summary

protected double	adjustedGraphHeight
protected double	adjustedGraphWidth
protected java.awt.Color	curveColor
protected java.awt.Graphics2D	g2d
protected GeneralGraphView	graphView
protected int	height
protected int	lineNumber
protected int	marginLeft
protected int	marginRight
protected int	marginTop
protected double	maxX
protected double	maxY
protected double	minX
protected double	minY
protected CurveModel	model
protected int	nPoints
protected Parameter	param
protected double	realGraphHeight
protected double	realGraphWidth
protected java.awt.Stroke	stroke
protected VistaApp	va
protected int	width
protected double	xDifference
protected int[]	xPoints
protected double	yDifference
protected int[]	yPoints

Constructor Summary

AbstractCurveView()

Method Summary

java.lang.Object	clone() clone
protected int	convertX(double x) convert graph coordinate into the screen coordinate
protected int	convertX(long x) convert graph coordinate into the screen coordinate
protected float	convertY(double y) convert graph coordinate into the screen coordinate
CurveModel	getCurveModel() return Curve Model
GeneralGraphView	getGraphView() return Graph View
double	getMaxX() get Max X
double	getMaxY() get Max Y
double	getMinX() get Min X
double	getMinY() get Min Y
double	getWidth() return adjusted graph width
void	refresh(long minX, long maxX) request new information from the server
protected void	renderInitialize() Initialize rendered This should be called every time the curve is rendered.
void	reRenderOff() switch reRender Off
void	reRenderOn() switch reRender On
void	setCurveModel(CurveModel model) set Curve Model
void	setGraphView(GeneralGraphView graphView) set Graph View
void	setLineNumber(int line) set Line Number
void	setMarginLeft(int x) set Left Margin
void	setMarginRight(int x) set Right Margin
void	setMarginTop(int y) set Top Margin
void	setMaxX(double x) set Max X
void	setMaxY(double y) set Max Y
void	setMinX(double x) set Min X
void	setMinY(double y) set Min Y
void	setSize(double width, double height) set Size
void	setStroke(java.awt.Stroke stroke) set Stroke
java.lang.String	toString() return text column with all points
protected long	xDisplay(int x) convert screen coordinate into the graph coordinate

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.lbl.genome.gui.CurveView

render

Field Detail

model

protected CurveModel model

graphView

protected GeneralGraphView graphView

stroke

protected java.awt.Stroke stroke

curveColor

protected java.awt.Color curveColor

minY

protected double minY

maxY

protected double maxY

yDifference

protected double yDifference

minX

protected double minX

maxX

protected double maxX

xDifference

protected double xDifference

realGraphHeight

protected double realGraphHeight

realGraphWidth

protected double realGraphWidth

adjustedGraphHeight

protected double adjustedGraphHeight

adjustedGraphWidth

protected double adjustedGraphWidth

va

protected VistaApp va

g2d

protected java.awt.Graphics2D g2d

xPoints

protected int[] xPoints

yPoints

protected int[] yPoints

nPoints

protected int nPoints

lineNumber

protected int lineNumber

marginLeft

protected int marginLeft

marginRight

protected int marginRight

marginTop

protected int marginTop

width

protected int width

height

protected int height

param

protected Parameter param

Constructor Detail

AbstractCurveView

public AbstractCurveView()

Method Detail

setLineNumber

public void setLineNumber(int line)

set Line Number

Parameters:

line - int

getMinX

public double getMinX()

get Min X

Returns:

double

getMaxX

public double getMaxX()

get Max X

Returns:

double

getMinY

public double getMinY()

get Min Y

Returns:

double

getMaxY

public double getMaxY()

get Max Y

Returns:

double

setMinX

public void setMinX(double x)

set Min X

Parameters:

x - double

setMaxX

public void setMaxX(double x)

set Max X

Parameters:

x - double

setMinY

public void setMinY(double y)

set Min Y

Parameters:

y - double

setMaxY

public void setMaxY(double y)

set Max Y

Parameters:

y - double

reRenderOff

public void reRenderOff()

switch reRender Off

reRenderOn

public void reRenderOn()

switch reRender On

setSize

public void setSize(double width,
                    double height)

set Size

Parameters:

width - double

height - double

getWidth

public double getWidth()

return adjusted graph width

Returns:

double

renderInitialize

protected void renderInitialize()

Initialize rendered This should be called every time the curve is rendered.

setGraphView

public void setGraphView(GeneralGraphView graphView)

set Graph View

Specified by:

setGraphView in interface CurveView

Parameters:

graphView - GeneralGraphView

getGraphView

public GeneralGraphView getGraphView()

return Graph View

Specified by:

getGraphView in interface CurveView

Returns:

GeneralGraphView

getCurveModel

public CurveModel getCurveModel()

return Curve Model

Specified by:

getCurveModel in interface CurveView

Returns:

CurveModel

setCurveModel

public void setCurveModel(CurveModel model)

set Curve Model

Specified by:

setCurveModel in interface CurveView

Parameters:

model - CurveModel

setStroke

public void setStroke(java.awt.Stroke stroke)

set Stroke

Parameters:

stroke - Stroke

convertX

protected final int convertX(double x)

convert graph coordinate into the screen coordinate

Parameters:

x - double

Returns:

int

convertX

protected final int convertX(long x)

convert graph coordinate into the screen coordinate

Parameters:

x - long

Returns:

int

xDisplay

protected long xDisplay(int x)

convert screen coordinate into the graph coordinate

Parameters:

x - int

Returns:

long

convertY

protected final float convertY(double y)

convert graph coordinate into the screen coordinate

Parameters:

y - double

Returns:

float

refresh

public void refresh(long minX,
                    long maxX)

request new information from the server

Specified by:

refresh in interface CurveView

Parameters:

minX - long

maxX - long

See Also:

CurveModel.refresh(VistaApp,long,long)

toString

public java.lang.String toString()

return text column with all points

Overrides:

toString in class java.lang.Object

clone

public java.lang.Object clone()

clone

Overrides:

clone in class java.lang.Object

Returns:

Object

setMarginLeft

public void setMarginLeft(int x)

set Left Margin

Parameters:

x - int

setMarginRight

public void setMarginRight(int x)

set Right Margin

Parameters:

x - int

setMarginTop

public void setMarginTop(int y)

set Top Margin

Parameters:

y - int