gov.lbl.genome.gui
Class VistaCurveView

java.lang.Object
  gov.lbl.genome.gui.AbstractCurveView
      gov.lbl.genome.gui.VistaCurveView

All Implemented Interfaces:

CurveView, java.lang.Cloneable

public class VistaCurveView
extends AbstractCurveView

Title: VistaCurveView

Description: create Vista curve picture

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

Field Summary

Fields inherited from class gov.lbl.genome.gui.AbstractCurveView

adjustedGraphHeight, adjustedGraphWidth, curveColor, g2d, graphView, height, lineNumber, marginLeft, marginRight, marginTop, maxX, maxY, minX, minY, model, nPoints, param, realGraphHeight, realGraphWidth, stroke, va, width, xDifference, xPoints, yDifference, yPoints

Constructor Summary

VistaCurveView(VistaCurveModel model, GeneralGraphView graphView, java.awt.Color color)
VistaCurveView

Method Summary

void	fillAnnotations(java.awt.Graphics g) draw all annotations
java.util.Vector	getContigs() return Contigs
java.lang.String	getRunOrg() return run_id and org_id in the form _
java.util.Vector	getStatistics() return Statistics about conserved regions for the curve
int	printInfo(java.awt.Graphics g, int margin, int marginTop) print summary information on printer, PDF or bitmap image page
void	render(java.awt.Graphics g) draw curve and annotation

Methods inherited from class gov.lbl.genome.gui.AbstractCurveView

clone, convertX, convertX, convertY, getCurveModel, getGraphView, getMaxX, getMaxY, getMinX, getMinY, getWidth, refresh, renderInitialize, reRenderOff, reRenderOn, setCurveModel, setGraphView, setLineNumber, setMarginLeft, setMarginRight, setMarginTop, setMaxX, setMaxY, setMinX, setMinY, setSize, setStroke, toString, xDisplay

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

VistaCurveView

public VistaCurveView(VistaCurveModel model,
                      GeneralGraphView graphView,
                      java.awt.Color color)

VistaCurveView

Parameters:

model - VistaCurveModel

graphView - GeneralGraphView

color - Color

Method Detail

getRunOrg

public java.lang.String getRunOrg()

return run_id and org_id in the form _

Returns:

String

getStatistics

public java.util.Vector getStatistics()

return Statistics about conserved regions for the curve

Returns:

Vector

printInfo

public int printInfo(java.awt.Graphics g,
                     int margin,
                     int marginTop)

print summary information on printer, PDF or bitmap image page

Parameters:

g - Graphics

margin - int

marginTop - int

Returns:

int

render

public void render(java.awt.Graphics g)

draw curve and annotation

Parameters:

g - Graphics

fillAnnotations

public void fillAnnotations(java.awt.Graphics g)

draw all annotations

Parameters:

g - Graphics

getContigs

public java.util.Vector getContigs()

return Contigs

Returns:

Vector