gov.lbl.genome.gui.panel
Class BaseInfoPanel

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  gov.lbl.genome.gui.panel.VGBPanel
                      gov.lbl.genome.gui.panel.BaseInfoPanel

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.awt.print.Printable, java.io.Serializable, javax.accessibility.Accessible

public class BaseInfoPanel
extends VGBPanel

Title: BaseInfoPanel

Description: This is one of the key classes. And this is bad! Initial requests are made from this class

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

boolean	firstSet
boolean	retrieveInitInfoDone

Fields inherited from class gov.lbl.genome.gui.panel.VGBPanel

commonParameters, debug, lineNumber, name, parameters, va

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.print.Printable

NO_SUCH_PAGE, PAGE_EXISTS

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

BaseInfoPanel(VistaApp vapp, java.lang.String initStartX, java.lang.String initEndX)
BaseInfoPanel

Method Summary

void	disableGUI() call setEnabled(false) for all visible components
void	enableGUI() call setEnabled(true) for all visible components
java.lang.String	getDefaultBaseGenome() get Default Base Genome
GenomeInfo	getDefaultGenome() return Default Genome
java.util.HashMap	getGenomes()
java.util.Iterator	getGenomesIter() return Genomes Iterator
int	getNumberOfRows() return number of rows or 0
java.util.Vector	getOrganisms() return list of Organisms
java.lang.String	getSelectedOrg() return Selected Organism
void	rereadInitInfo(java.util.HashMap g) reread Init Info
void	resetBaseGenome(java.lang.String genome) reset Base Genome
void	resetDefaultBaseGenome() reset Default Base Genome
void	resetOrgList() reset Org List
void	retrieveInitInfo() retrieve Init Info
void	setBaseGenome(CurveInfo curve, java.util.Vector vcontigs) set Base Genome
void	setBaseGenome(Status status) set Base Genome from status
void	setBaseGenome(java.lang.String genome) set Base Genome
void	setContig(java.lang.String c) setText (contig name) for current contig label
void	setDefaultBaseGenome() set Default Base Genome
void	setGenomes(java.util.HashMap genomes)
void	setOrgLabel(int org) set OrgLabel text: number of available organisms
void	setOrgList(java.util.Vector curves, java.util.Vector displayed) set List of Organisms

Methods inherited from class gov.lbl.genome.gui.panel.VGBPanel

Debug, dispatch, dispatchEvent, findParentFrame, print

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

firstSet

public boolean firstSet

retrieveInitInfoDone

public boolean retrieveInitInfoDone

Constructor Detail

BaseInfoPanel

public BaseInfoPanel(VistaApp vapp,
                     java.lang.String initStartX,
                     java.lang.String initEndX)

BaseInfoPanel

Parameters:

vapp - VistaApp

initStartX - String

initEndX - String

Method Detail

retrieveInitInfo

public void retrieveInitInfo()

retrieve Init Info

rereadInitInfo

public void rereadInitInfo(java.util.HashMap g)

reread Init Info

Parameters:

g - HashMap

setContig

public void setContig(java.lang.String c)

setText (contig name) for current contig label

Parameters:

c - String

setDefaultBaseGenome

public void setDefaultBaseGenome()

set Default Base Genome

getDefaultBaseGenome

public java.lang.String getDefaultBaseGenome()

get Default Base Genome

Returns:

String

resetDefaultBaseGenome

public void resetDefaultBaseGenome()

reset Default Base Genome

setBaseGenome

public void setBaseGenome(CurveInfo curve,
                          java.util.Vector vcontigs)

set Base Genome

Parameters:

curve - CurveInfo

vcontigs - Vector

setBaseGenome

public void setBaseGenome(Status status)

set Base Genome from status

Parameters:

status - Status

setBaseGenome

public void setBaseGenome(java.lang.String genome)

set Base Genome

Parameters:

genome - String

setOrgList

public void setOrgList(java.util.Vector curves,
                       java.util.Vector displayed)

set List of Organisms

Parameters:

curves - Vector

displayed - Vector

resetOrgList

public void resetOrgList()

reset Org List

resetBaseGenome

public void resetBaseGenome(java.lang.String genome)

reset Base Genome

Parameters:

genome - String

getDefaultGenome

public GenomeInfo getDefaultGenome()

return Default Genome

Returns:

GenomeInfo

enableGUI

public void enableGUI()

call setEnabled(true) for all visible components

disableGUI

public void disableGUI()

call setEnabled(false) for all visible components

setGenomes

public void setGenomes(java.util.HashMap genomes)

getGenomes

public java.util.HashMap getGenomes()

getGenomesIter

public java.util.Iterator getGenomesIter()

return Genomes Iterator

Returns:

Iterator

getNumberOfRows

public int getNumberOfRows()

return number of rows or 0

Returns:

int

getSelectedOrg

public java.lang.String getSelectedOrg()

return Selected Organism

Returns:

String

setOrgLabel

public void setOrgLabel(int org)

set OrgLabel text: number of available organisms

Parameters:

org - int

getOrganisms

public java.util.Vector getOrganisms()

return list of Organisms

Returns:

Vector