gov.lbl.genome.gui.panel
Class AnnotationPanel

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  gov.lbl.genome.gui.panel.VGBPanel
                      gov.lbl.genome.gui.panel.VistaPanel
                          gov.lbl.genome.gui.panel.AnnotationPanel

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.awt.print.Printable, java.io.Serializable, java.lang.Cloneable, javax.accessibility.Accessible

public class AnnotationPanel
extends VistaPanel
implements java.lang.Cloneable

Title: AnnotationPanel

Description: Draw annotation picture

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

int	ANNOTATION_HEIGHT
int	GENE_NAME_OFFSET
int	GENE_Y_POS

Fields inherited from class gov.lbl.genome.gui.panel.VistaPanel

bottom, bottomSpace, df, g2d, height, horizSize, image, leftSpace, maxX, minX, offsetWidth, pixelWidth, rightSpace, top, topSpace, vertSize, wait_cursor, waitCursor

Fields inherited from class gov.lbl.genome.gui.panel.VGBPanel

commonParameters, debug, lineNumber, name, parameters, va

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.print.Printable

NO_SUCH_PAGE, PAGE_EXISTS

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

AnnotationPanel(VistaApp vapp)
AnnotationPanel

AnnotationPanel(VistaApp vapp, java.awt.print.PageFormat pf)
AnnotationPanel

Method Summary

java.lang.Object	clone() clone the panel
java.awt.Graphics2D	createImage() create annotation Image
void	drawContent(java.awt.Graphics g) draw Content
void	drawContent(java.awt.Graphics g, java.awt.print.PageFormat pf, int line) draw Content
java.util.Vector	getAnnotations() return Annotations
java.awt.image.BufferedImage	getImage() return pictures Image
java.awt.image.BufferedImage	getImage(int i) return pictures Image
AnnotationPanelPicture	getPicture() return annotation Picture
void	requestAnnotations(java.lang.String chromosome, long start, long end) request Annotations from the server
void	resetPicture() reset annotation Picture
void	setAnnotations(java.util.Vector annotations) set Annotations

Methods inherited from class gov.lbl.genome.gui.panel.VistaPanel

convertX, convertX, getFormattedNumberString, getFormattedNumberString, getFormattedXDisplayString, getFormattedXDisplayString, getHorizSize, getStringWidth, getVertSize, getXDisplay, getXDisplay, paintComponent, removeImage, setImage, shortenString

Methods inherited from class gov.lbl.genome.gui.panel.VGBPanel

Debug, dispatch, dispatchEvent, findParentFrame, print

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

GENE_Y_POS

public int GENE_Y_POS

GENE_NAME_OFFSET

public int GENE_NAME_OFFSET

ANNOTATION_HEIGHT

public int ANNOTATION_HEIGHT

Constructor Detail

AnnotationPanel

public AnnotationPanel(VistaApp vapp)

AnnotationPanel

Parameters:

vapp - VistaApp

AnnotationPanel

public AnnotationPanel(VistaApp vapp,
                       java.awt.print.PageFormat pf)

AnnotationPanel

Parameters:

vapp - VistaApp

pf - PageFormat

Method Detail

setAnnotations

public void setAnnotations(java.util.Vector annotations)

set Annotations

Parameters:

annotations - Vector

getAnnotations

public java.util.Vector getAnnotations()

return Annotations

Returns:

Vector

getImage

public java.awt.image.BufferedImage getImage()

return pictures Image

Returns:

BufferedImage

getImage

public java.awt.image.BufferedImage getImage(int i)

return pictures Image

Parameters:

i - int

Returns:

BufferedImage

requestAnnotations

public void requestAnnotations(java.lang.String chromosome,
                               long start,
                               long end)

request Annotations from the server

Parameters:

chromosome - String

start - long

end - long

See Also:

CommUnit.getAnno(String, String, String, String, String)

drawContent

public void drawContent(java.awt.Graphics g)

draw Content

Parameters:

g - Graphics

drawContent

public void drawContent(java.awt.Graphics g,
                        java.awt.print.PageFormat pf,
                        int line)

draw Content

Parameters:

g - Graphics

pf - PageFormat

line - int

getPicture

public AnnotationPanelPicture getPicture()

return annotation Picture

Returns:

AnnotationPanelPicture

createImage

public java.awt.Graphics2D createImage()

create annotation Image

Overrides:

createImage in class VistaPanel

Returns:

Graphics2D

clone

public java.lang.Object clone()

clone the panel

Overrides:

clone in class java.lang.Object

Returns:

Object

resetPicture

public void resetPicture()

reset annotation Picture