gov.lbl.genome.gui.panel
Class VistaPanel

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  gov.lbl.genome.gui.panel.VGBPanel
                      gov.lbl.genome.gui.panel.VistaPanel

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.awt.print.Printable, java.io.Serializable, javax.accessibility.Accessible

Direct Known Subclasses:

AnnotationPanel, ArrowsPanel, AxisPanel, ChromPanel, ContigPanel, DisplayPanel, GeneralGraphComp, RepeatPanel, TracerPanel, XAxisPanel

public class VistaPanel
extends VGBPanel

Title: VistaPanel

Description: Parent class for many panels

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

protected int	bottom
protected int	bottomSpace
protected java.text.DecimalFormat	df
protected java.awt.Graphics2D	g2d
protected int	height
protected int	horizSize
protected java.awt.image.BufferedImage	image
protected int	leftSpace
protected long	maxX
protected long	minX
protected int	offsetWidth
protected double	pixelWidth
protected int	rightSpace
protected int	top
protected int	topSpace
protected int	vertSize
protected boolean	wait_cursor
protected java.awt.Cursor	waitCursor

Fields inherited from class gov.lbl.genome.gui.panel.VGBPanel

commonParameters, debug, lineNumber, name, parameters, va

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.print.Printable

NO_SUCH_PAGE, PAGE_EXISTS

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

VistaPanel(VistaApp vapp)
VistaPanel

VistaPanel(VistaApp vapp, int line)

VistaPanel(VistaApp vapp, java.awt.print.PageFormat pf)

VistaPanel(VistaApp vapp, java.awt.print.PageFormat pf, int line)

Method Summary

protected int	convertX(double x) convert chromosome coordinates into screen (panel) coordinates
protected int	convertX(long x) convert chromosome coordinates into screen (panel) coordinates
java.awt.Graphics2D	createImage() create transparent bitmap image.
java.lang.String	getFormattedNumberString(double x, int maxFracDigits) return formatted string
java.lang.String	getFormattedNumberString(int x, int maxFracDigits) return formattes string
java.lang.String	getFormattedXDisplayString(int currXPos) This method converts an x-coordinate on the data display panel to an x-coordinate on the graph and return formatted string.
java.lang.String	getFormattedXDisplayString(int currXPos, int line) This method converts an x-coordinate on the data display panel to an x-coordinate on the graph and return formatted string.
int	getHorizSize() return adjusted panel width
int	getStringWidth(java.lang.String s, java.awt.Font f) return width in pixels for the strind s and font f
int	getVertSize() return adjusted panel height
int	getXDisplay(int currXPos) convert screen coordinates into chromosome coordinates
int	getXDisplay(int currXPos, int line) convert screen coordinates into chromosome coordinates
void	paintComponent(java.awt.Graphics g) paintComponent overload JPanel paintComponent.
void	removeImage() remove image.
void	setImage(java.awt.image.BufferedImage im) set new image created by somebody else.
java.lang.String	shortenString(java.lang.String s, java.awt.Font f, int width) shorten string is useful if string is long and does not fit in width.

Methods inherited from class gov.lbl.genome.gui.panel.VGBPanel

Debug, dispatch, dispatchEvent, findParentFrame, print

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

wait_cursor

protected boolean wait_cursor

topSpace

protected int topSpace

bottomSpace

protected int bottomSpace

leftSpace

protected int leftSpace

rightSpace

protected int rightSpace

vertSize

protected int vertSize

horizSize

protected int horizSize

top

protected int top

bottom

protected int bottom

height

protected int height

minX

protected long minX

maxX

protected long maxX

offsetWidth

protected int offsetWidth

pixelWidth

protected double pixelWidth

df

protected java.text.DecimalFormat df

waitCursor

protected java.awt.Cursor waitCursor

image

protected java.awt.image.BufferedImage image

g2d

protected java.awt.Graphics2D g2d

Constructor Detail

VistaPanel

public VistaPanel(VistaApp vapp)

VistaPanel

Parameters:

vapp - VistaApp

VistaPanel

public VistaPanel(VistaApp vapp,
                  int line)

Parameters:

vapp - VistaApp

line - int

VistaPanel

public VistaPanel(VistaApp vapp,
                  java.awt.print.PageFormat pf,
                  int line)

Parameters:

vapp - VistaApp

pf - PageFormat

line - int

VistaPanel

public VistaPanel(VistaApp vapp,
                  java.awt.print.PageFormat pf)

Parameters:

vapp - VistaApp

pf - PageFormat

Method Detail

getFormattedXDisplayString

public java.lang.String getFormattedXDisplayString(int currXPos)

This method converts an x-coordinate on the data display panel to an x-coordinate on the graph and return formatted string.

Parameters:

currXPos - int

Returns:

String

getFormattedXDisplayString

public java.lang.String getFormattedXDisplayString(int currXPos,
                                                   int line)

This method converts an x-coordinate on the data display panel to an x-coordinate on the graph and return formatted string.

Parameters:

currXPos - int

Returns:

String

getXDisplay

public int getXDisplay(int currXPos)

convert screen coordinates into chromosome coordinates

Parameters:

currXPos - int

Returns:

int

getXDisplay

public int getXDisplay(int currXPos,
                       int line)

convert screen coordinates into chromosome coordinates

Parameters:

currXPos - int

line - int

Returns:

int

getFormattedNumberString

public java.lang.String getFormattedNumberString(double x,
                                                 int maxFracDigits)

return formatted string

Parameters:

x - double

maxFracDigits - int

Returns:

String

getFormattedNumberString

public java.lang.String getFormattedNumberString(int x,
                                                 int maxFracDigits)

return formattes string

Parameters:

x - int

maxFracDigits - int

Returns:

String

getHorizSize

public int getHorizSize()

return adjusted panel width

Returns:

int

getVertSize

public int getVertSize()

return adjusted panel height

Returns:

int

paintComponent

public void paintComponent(java.awt.Graphics g)

paintComponent overload JPanel paintComponent. Prepare some parameters. If image does not exist - create it first. Draw image.

Overrides:

paintComponent in class javax.swing.JComponent

Parameters:

g - Graphics

convertX

protected int convertX(long x)

convert chromosome coordinates into screen (panel) coordinates

Parameters:

x - long

Returns:

int

convertX

protected int convertX(double x)

convert chromosome coordinates into screen (panel) coordinates

Parameters:

x - double

Returns:

int

createImage

public java.awt.Graphics2D createImage()

create transparent bitmap image. It's dimentions are taken from the panel size. Return Graphics2D

Returns:

Graphics2D

removeImage

public void removeImage()

remove image. New image will be created during next paintComponent() call

setImage

public void setImage(java.awt.image.BufferedImage im)

set new image created by somebody else. Dont forget to call repaint();

getStringWidth

public int getStringWidth(java.lang.String s,
                          java.awt.Font f)

return width in pixels for the strind s and font f

Parameters:

s - String

f - Font

Returns:

int

shortenString

public java.lang.String shortenString(java.lang.String s,
                                      java.awt.Font f,
                                      int width)

shorten string is useful if string is long and does not fit in width.

Parameters:

s - String

f - Font

width - int

Returns:

String