gov.lbl.genome.gui.panel
Class RepeatPanel

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  gov.lbl.genome.gui.panel.VGBPanel
                      gov.lbl.genome.gui.panel.VistaPanel
                          gov.lbl.genome.gui.panel.RepeatPanel

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.awt.print.Printable, java.io.Serializable, java.lang.Cloneable, javax.accessibility.Accessible

public class RepeatPanel
extends VistaPanel
implements java.lang.Cloneable

Title: RepeatPanel

Description: Draw repeats

Copyright: Copyright (c) 2002 Ernest Orlando Lawrence Berkeley National Laboratory

Company: LBNL

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

int	REPEAT_HEIGHT
int	REPEAT_OFFSET

Fields inherited from class gov.lbl.genome.gui.panel.VistaPanel

bottom, bottomSpace, df, g2d, height, horizSize, image, leftSpace, maxX, minX, offsetWidth, pixelWidth, rightSpace, top, topSpace, vertSize, wait_cursor, waitCursor

Fields inherited from class gov.lbl.genome.gui.panel.VGBPanel

commonParameters, debug, lineNumber, name, parameters, va

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.print.Printable

NO_SUCH_PAGE, PAGE_EXISTS

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

RepeatPanel(VistaApp vapp)

RepeatPanel(VistaApp vapp, java.awt.print.PageFormat pf)
RepeatPanel

Method Summary

java.lang.Object	clone() clone
java.awt.Graphics2D	createImage() createImage
void	drawContent(java.awt.Graphics g) drawContent
void	drawContent(java.awt.Graphics g, java.awt.print.PageFormat pf, int line) drawContent
java.awt.Color	getAnnotationColor(int xCoor) return Annotation Color
java.util.Vector	getAnnotations() return annotations
java.awt.image.BufferedImage	getImage() return Image
java.awt.image.BufferedImage	getImage(int i) return Image
RepeatPanelPicture	getPicture() getPicture
void	requestAnnotations(java.lang.String chromosome, long start, long end) request Annotations from server
void	resetPicture() reset picture size and margins
void	setAnnotations(java.util.Vector annotations) set annotations

Methods inherited from class gov.lbl.genome.gui.panel.VistaPanel

convertX, convertX, getFormattedNumberString, getFormattedNumberString, getFormattedXDisplayString, getFormattedXDisplayString, getHorizSize, getStringWidth, getVertSize, getXDisplay, getXDisplay, paintComponent, removeImage, setImage, shortenString

Methods inherited from class gov.lbl.genome.gui.panel.VGBPanel

Debug, dispatch, dispatchEvent, findParentFrame, print

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

REPEAT_OFFSET

public int REPEAT_OFFSET

REPEAT_HEIGHT

public int REPEAT_HEIGHT

Constructor Detail

RepeatPanel

public RepeatPanel(VistaApp vapp)

RepeatPanel

public RepeatPanel(VistaApp vapp,
                   java.awt.print.PageFormat pf)

RepeatPanel

Parameters:

vapp - VistaApp

pf - PageFormat

Method Detail

setAnnotations

public void setAnnotations(java.util.Vector annotations)

set annotations

Parameters:

annotations - Vector

getAnnotations

public java.util.Vector getAnnotations()

return annotations

Returns:

Vector

requestAnnotations

public void requestAnnotations(java.lang.String chromosome,
                               long start,
                               long end)

request Annotations from server

Parameters:

chromosome - String

start - long

end - long

See Also:

CommUnit.getAnno(String, String, String, String, String)

getImage

public java.awt.image.BufferedImage getImage()

return Image

Returns:

BufferedImage

getImage

public java.awt.image.BufferedImage getImage(int i)

return Image

Parameters:

i - int

Returns:

BufferedImage

getAnnotationColor

public java.awt.Color getAnnotationColor(int xCoor)

return Annotation Color

Parameters:

xCoor - int

Returns:

Color

drawContent

public void drawContent(java.awt.Graphics g)

drawContent

Parameters:

g - Graphics

drawContent

public void drawContent(java.awt.Graphics g,
                        java.awt.print.PageFormat pf,
                        int line)

drawContent

Parameters:

g - Graphics

pf - PageFormat

line - int

getPicture

public RepeatPanelPicture getPicture()

getPicture

Returns:

RepeatPanelPicture

createImage

public java.awt.Graphics2D createImage()

createImage

Overrides:

createImage in class VistaPanel

Returns:

Graphics2D

clone

public java.lang.Object clone()

clone

Overrides:

clone in class java.lang.Object

Returns:

Object

resetPicture

public void resetPicture()

reset picture size and margins