Hierarchy For All Packages

Package Hierarchies:

gnu.jpdf, gov.lbl.genome.common, gov.lbl.genome.common.features, gov.lbl.genome.gui, gov.lbl.genome.gui.action, gov.lbl.genome.gui.dialog, gov.lbl.genome.gui.panel, layout, ranab.img.gif, ranab.util, sjg.xml

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • gov.lbl.genome.gui.action.VAbstractAction (implements java.lang.Runnable)
      • gov.lbl.genome.gui.action.AboutAction
      • gov.lbl.genome.gui.action.AddAction
      • gov.lbl.genome.gui.action.BackAction
      • gov.lbl.genome.gui.action.DetailsAction
      • gov.lbl.genome.gui.action.ForwardAction
      • gov.lbl.genome.gui.action.HelpAction
      • gov.lbl.genome.gui.action.PageSetupAction
      • gov.lbl.genome.gui.action.PrintAction
      • gov.lbl.genome.gui.action.PrinterSetupAction
      • gov.lbl.genome.gui.action.RemoveAction
      • gov.lbl.genome.gui.action.SaveAsAction
      • gov.lbl.genome.gui.action.ScrollBackwardAction
      • gov.lbl.genome.gui.action.ScrollForwardAction
      • gov.lbl.genome.gui.action.SettingsAction
      • gov.lbl.genome.gui.action.StatAction
      • gov.lbl.genome.gui.action.SwapCurvesAction
      • gov.lbl.genome.gui.action.UCSCBrowserAction
      • gov.lbl.genome.gui.action.ZoomInAction
      • gov.lbl.genome.gui.action.ZoomOutAction
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.Vector<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • gov.lbl.genome.common.features.ChromSegments
        • gov.lbl.genome.gui.panel.GraphViewList
  • gov.lbl.genome.common.AbstractCurveModel (implements java.lang.Cloneable, gov.lbl.genome.common.CurveModel)
    • gov.lbl.genome.common.CustomCurveModel
    • gov.lbl.genome.common.PCurveModel (implements java.lang.Cloneable)
    • gov.lbl.genome.common.VistaCurveModel (implements java.lang.Cloneable)
  • gov.lbl.genome.gui.AbstractCurveView (implements java.lang.Cloneable, gov.lbl.genome.gui.CurveView)
    • gov.lbl.genome.gui.PValueCurveView
    • gov.lbl.genome.gui.VistaCurveView
  • gov.lbl.genome.common.AbstractGraphModel (implements java.lang.Cloneable, gov.lbl.genome.common.GraphModel)
    • gov.lbl.genome.common.GeneralGraphModel
  • sjg.xml.Attribute
  • ranab.img.BaseImage
    • ranab.img.gif.GifImage
  • gov.lbl.genome.common.BrowserInfo
  • ranab.util.ByteUtils
  • gov.lbl.genome.common.ChromInfo
  • gov.lbl.genome.common.features.ChromPosition
    • gov.lbl.genome.common.features.Gap
  • gov.lbl.genome.common.features.ChromSegment (implements java.lang.Cloneable, java.lang.Comparable<T>)
    • gov.lbl.genome.common.features.Cns
    • gov.lbl.genome.common.features.Contig
    • gov.lbl.genome.common.features.Exon
    • gov.lbl.genome.common.features.Gene
    • gov.lbl.genome.common.features.PValue
    • gov.lbl.genome.common.features.Repeat
    • gov.lbl.genome.common.features.SuperContig
    • gov.lbl.genome.common.features.Utr
  • sjg.xml.Comment
  • gov.lbl.genome.common.CommUnit
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • gov.lbl.genome.gui.LinkLabel (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
          • gov.lbl.genome.gui.VistaLabel
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • gov.lbl.genome.gui.panel.AbstractActionDialogPanel
            • gov.lbl.genome.gui.panel.ContigListPanel
            • gov.lbl.genome.gui.panel.SaveAsPanel
            • gov.lbl.genome.gui.panel.SearchResultsPanel
            • gov.lbl.genome.gui.panel.StatPanel
          • gov.lbl.genome.gui.panel.LegendPanel
          • gov.lbl.genome.gui.panel.VGBPanel (implements java.awt.print.Printable)
            • gov.lbl.genome.gui.panel.BaseInfoPanel
            • gov.lbl.genome.gui.panel.CursorInfoPanel
            • gov.lbl.genome.gui.GeneralGraphView
            • gov.lbl.genome.gui.panel.GeneSearchPanel (implements java.lang.Runnable)
            • gov.lbl.genome.gui.panel.VistaPanel
              • gov.lbl.genome.gui.panel.AnnotationPanel (implements java.lang.Cloneable)
              • gov.lbl.genome.gui.panel.ArrowsPanel
              • gov.lbl.genome.gui.panel.AxisPanel
              • gov.lbl.genome.gui.panel.ChromPanel
              • gov.lbl.genome.gui.panel.ContigPanel
              • gov.lbl.genome.gui.panel.DisplayPanel (implements java.awt.event.ComponentListener)
              • gov.lbl.genome.gui.GeneralGraphComp
              • gov.lbl.genome.gui.panel.RepeatPanel (implements java.lang.Cloneable)
              • gov.lbl.genome.gui.panel.TracerPanel (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
              • gov.lbl.genome.gui.panel.XAxisPanel
      • java.awt.Panel (implements javax.accessibility.Accessible)
        • java.applet.Applet
          • javax.swing.JApplet (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
            • gov.lbl.genome.gui.VistaApp (implements java.lang.Runnable, java.awt.event.WindowListener)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • gov.lbl.genome.gui.dialog.ActionDialog
              • gov.lbl.genome.gui.dialog.ContigListDialog
              • gov.lbl.genome.gui.dialog.SaveAsDialog
              • gov.lbl.genome.gui.dialog.SearchResultsDialog
              • gov.lbl.genome.gui.dialog.StatDialog
            • gov.lbl.genome.gui.SplashWindow
            • gov.lbl.genome.gui.dialog.VistaDialog
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • gnu.jpdf.PDFTest (implements java.awt.event.ActionListener)
  • gov.lbl.genome.common.CurveInfo (implements java.lang.Cloneable)
    • gov.lbl.genome.common.GumbyCurveInfo
    • gov.lbl.genome.common.VistaCurveInfo
  • gov.lbl.genome.gui.CurveParameters
  • sjg.xml.Data
  • gov.lbl.genome.gui.Debug
  • sjg.xml.Document
  • sjg.xml.Element
  • gov.lbl.genome.gui.ErrorHandler
  • gov.lbl.genome.common.GenesInfo
  • gov.lbl.genome.common.GenomeInfo
  • ranab.img.gif.GifColor
  • ranab.img.gif.GifEx
    • ranab.img.gif.GifAppEx
      • ranab.img.gif.GifNsAppEx
    • ranab.img.gif.GifCommentEx
    • ranab.img.gif.GifGraphicEx
  • ranab.img.gif.GifImageDescriptor
  • ranab.img.gif.GifScreenDescriptor
  • java.awt.Graphics
    • gnu.jpdf.PDFGraphics (implements java.io.Serializable)
  • gov.lbl.genome.gui.History
  • java.io.InputStream (implements java.io.Closeable)
    • gov.lbl.genome.common.StringInputStream
  • gov.lbl.genome.common.NetUtil
  • gov.lbl.genome.gui.Parameter
  • sjg.xml.Parser
  • gnu.jpdf.PDFDocument (implements java.io.Serializable)
  • gnu.jpdf.PDFObject (implements java.io.Serializable)
    • gnu.jpdf.PDFAnnot (implements java.io.Serializable)
    • gnu.jpdf.PDFBorder
    • gnu.jpdf.PDFCatalog
    • gnu.jpdf.PDFFont (implements java.io.Serializable)
    • gnu.jpdf.PDFInfo
    • gnu.jpdf.PDFOutline (implements java.io.Serializable)
    • gnu.jpdf.PDFPage (implements java.io.Serializable)
    • gnu.jpdf.PDFPage.procset
    • gnu.jpdf.PDFPageList
    • gnu.jpdf.PDFStream (implements java.io.Serializable)
      • gnu.jpdf.PDFImage (implements java.awt.image.ImageObserver, java.io.Serializable)
  • gnu.jpdf.PDFOutput
  • gnu.jpdf.PDFStringHelper
  • gnu.jpdf.PDFXref
  • gov.lbl.genome.gui.Picture
    • gov.lbl.genome.gui.panel.AnnotationPanelPicture
    • gov.lbl.genome.gui.panel.AxisPanelPicture
    • gov.lbl.genome.gui.panel.ChromPanelPicture
    • gov.lbl.genome.gui.panel.ContigPanelPicture
    • gov.lbl.genome.gui.panel.RepeatPanelPicture
  • java.awt.PrintJob
    • gnu.jpdf.PDFJob (implements java.io.Serializable)
  • sjg.xml.ProcessingInstruction
  • gov.lbl.genome.gui.QSortAlgorithm
  • java.awt.geom.RectangularShape (implements java.lang.Cloneable, java.awt.Shape)
    • java.awt.geom.Rectangle2D
      • java.awt.Rectangle (implements java.io.Serializable, java.awt.Shape)
        • gnu.jpdf.BoundingBox
  • gov.lbl.genome.gui.Resource
  • gov.lbl.genome.gui.Status
  • gov.lbl.genome.common.StringUtil
  • layout.TableLayout (implements java.awt.LayoutManager2, java.io.Serializable, layout.TableLayoutConstants)
  • layout.TableLayoutConstraints (implements layout.TableLayoutConstants)
    • layout.TableLayout.Entry
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • gov.lbl.genome.common.BadCoordinateTypeException
      • gov.lbl.genome.common.GeneNotFoundException
      • gov.lbl.genome.gui.InvalidDataEntryException
      • gnu.jpdf.StringTooLongException
      • gov.lbl.genome.common.VGBException
  • sjg.xml.Tokenizer
  • gov.lbl.genome.common.ViewSettings

Interface Hierarchy

• gov.lbl.genome.gui.dialog.Callback
• gov.lbl.genome.common.CommonConstants
• gov.lbl.genome.common.CurveModel
• gov.lbl.genome.gui.CurveView
• gov.lbl.genome.common.GraphModel
• gov.lbl.genome.gui.GraphView
• layout.TableLayoutConstants
• gov.lbl.genome.gui.UIConstants
• gov.lbl.genome.common.VistaModelConstants